Gm43957 Pseudogene Detail

Summary

• Symbol
  Gm43957
• Name
  predicted gene, 43957

• Feature Type
  pseudogene
• IDs
  MGI:5690349
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:85079795-85080551 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690349	pseudogene	Chr6:85079795-85080551 (+)
129S1/SvImJ	ENSMUSG00200012839	pseudogene	Chr6:82043815-82044571 (+)
A/J	ENSMUSG00195012494	pseudogene	Chr6:81728218-81728974 (+)
AKR/J	ENSMUSG00220002175	pseudogene	Chr6:80691182-80691938 (+)
BALB/cJ	ENSMUSG00180010389	pseudogene	Chr6:82105545-82106301 (+)
C3H/HeJ	ENSMUSG00175041668	pseudogene	Chr6:95300409-95301165 (-)
C57BL/6NJ	ENSMUSG00215014978	pseudogene	Chr6:82101210-82101966 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011969	pseudogene	Chr6:81242990-81243759 (+)
CAST/EiJ	ENSTCUG00005008530	pseudogene	Chr6:82094736-82095492 (+)
CBA/J	ENSMUSG00210011303	pseudogene	Chr6:81919355-81920111 (+)
DBA/2J	ENSMUSG00185046337	pseudogene	Chr6:82466487-82467243 (+)
FVB/NJ	ENSMUSG00205025647	pseudogene	Chr6:81159236-81159992 (+)
JF1/MsJ	ENSUMUG00000024679	pseudogene	Chr6:81522521-81523262 (+)
LP/J	ENSMUSG00230050908	pseudogene	Chr6:83600553-83601309 (+)
NOD/ShiLtJ	ENSMUSG00190043722	pseudogene	Chr6:81543262-81544018 (+)
NZO/HlLtJ	ENSMUSG00225020009	pseudogene	Chr6:85514765-85515521 (+)
PWK/PhJ	ENSLUMG00010006285	pseudogene	Chr6:80872274-80873029 (+)
SPRET/EiJ	ENSMSPG00010043359	pseudogene	Chr6:83010799-83011554 (+)
WSB/EiJ	ENSIUOG00005019192	pseudogene	Chr6:82482278-82483034 (+)

Homology

• Gene Tree
  Gm43957
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43957
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107925 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107925	Ensembl Gene Model | MGI Sequence Detail	757	C57BL/6J
transcript	ENSMUST00000203606	Ensembl | MGI Sequence Detail	362	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48