Gm43955 Pseudogene Detail

Summary

• Symbol
  Gm43955
• Name
  predicted gene, 43955

• Feature Type
  pseudogene
• IDs
  MGI:5690347
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:85073909-85074050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690347	pseudogene	Chr6:85073909-85074050 (+)
129S1/SvImJ	ENSMUSG00200012877	pseudogene	Chr6:82037931-82038072 (+)
A/J	ENSMUSG00195012513	pseudogene	Chr6:81722330-81722471 (+)
AKR/J	ENSMUSG00220002188	pseudogene	Chr6:80685300-80685441 (+)
BALB/cJ	ENSMUSG00180010430	pseudogene	Chr6:82099659-82099800 (+)
C3H/HeJ	ENSMUSG00175041844	pseudogene	Chr6:95306910-95307051 (-)
C57BL/6NJ	ENSMUSG00215015055	pseudogene	Chr6:82095322-82095463 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008551	pseudogene	Chr6:82088866-82089007 (+)
CBA/J	ENSMUSG00210011325	pseudogene	Chr6:81913469-81913610 (+)
DBA/2J	ENSMUSG00185046421	pseudogene	Chr6:82460601-82460742 (+)
FVB/NJ	ENSMUSG00205025827	pseudogene	Chr6:81153356-81153497 (+)
JF1/MsJ	ENSUMUG00000024585	pseudogene	Chr6:81516614-81516755 (+)
LP/J	ENSMUSG00230051113	pseudogene	Chr6:83594669-83594810 (+)
NOD/ShiLtJ	ENSMUSG00190043786	pseudogene	Chr6:81537382-81537523 (+)
NZO/HlLtJ	ENSMUSG00225020349	pseudogene	Chr6:85508881-85509022 (+)
PWK/PhJ	ENSLUMG00010006270	pseudogene	Chr6:80866491-80866632 (+)
SPRET/EiJ	ENSMSPG00010043335	pseudogene	Chr6:83005002-83005143 (+)
WSB/EiJ	ENSIUOG00005019241	pseudogene	Chr6:82476399-82476540 (+)

Homology

• Gene Tree
  Gm43955
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43955
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107536 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107536	Ensembl Gene Model | MGI Sequence Detail	142	C57BL/6J
transcript	ENSMUST00000204332	Ensembl | MGI Sequence Detail	142	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48