Gm43954 Pseudogene Detail

Summary

• Symbol
  Gm43954
• Name
  predicted gene, 43954

• Feature Type
  pseudogene
• IDs
  MGI:5690346
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:85069217-85069760 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690346	pseudogene	Chr6:85069217-85069760 (+)
129S1/SvImJ	ENSMUSG00200012843	pseudogene	Chr6:82033239-82033782 (+)
A/J	ENSMUSG00195012497	pseudogene	Chr6:81717638-81718181 (+)
AKR/J	ENSMUSG00220002178	pseudogene	Chr6:80680608-80681151 (+)
BALB/cJ	ENSMUSG00180010396	pseudogene	Chr6:82094967-82095510 (+)
C3H/HeJ	ENSMUSG00175041707	pseudogene	Chr6:95311200-95311743 (-)
C57BL/6NJ	ENSMUSG00215014996	pseudogene	Chr6:82090630-82091173 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011968	pseudogene	Chr6:81235470-81236007 (+)
CAST/EiJ	ENSTCUG00005008533	pseudogene	Chr6:82084174-82084717 (+)
CBA/J	ENSMUSG00210011309	pseudogene	Chr6:81908777-81909320 (+)
DBA/2J	ENSMUSG00185046348	pseudogene	Chr6:82455909-82456452 (+)
FVB/NJ	ENSMUSG00205025679	pseudogene	Chr6:81148664-81149207 (+)
JF1/MsJ	ENSUMUG00000024723	pseudogene	Chr6:81511926-81512470 (+)
LP/J	ENSMUSG00230050636	pseudogene	Chr6:83589977-83590520 (+)
NOD/ShiLtJ	ENSMUSG00190001751	pseudogene	Chr6:81532690-81533233 (+)
NZO/HlLtJ	ENSMUSG00225020618	pseudogene	Chr6:85504189-85504732 (+)
PWK/PhJ	ENSLUMG00010006289	pseudogene	Chr6:80861804-80862348 (+)
SPRET/EiJ	ENSMSPG00010043396	pseudogene	Chr6:83000336-83000868 (+)
WSB/EiJ	ENSIUOG00005019209	pseudogene	Chr6:82471707-82472250 (+)

Homology

• Gene Tree
  Gm43954
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43954
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107409 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107409	Ensembl Gene Model | MGI Sequence Detail	544	C57BL/6J
transcript	ENSMUST00000204634	Ensembl | MGI Sequence Detail	544	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48