Gm43920 Gene Detail

Summary

• Symbol
  Gm43920
• Name
  predicted gene, 43920

• Feature Type
  lncRNA gene
• IDs
  MGI:5690312
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:83939259-83942030 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690312	lncRNA gene	Chr6:83939259-83942030 (+)
129S1/SvImJ	ENSMUSG00200012902	lncRNA gene	Chr6:80908374-80911145 (+)
A/J	ENSMUSG00195012419	lncRNA gene	Chr6:80587318-80590091 (+)
AKR/J	ENSMUSG00220002266	lncRNA gene	Chr6:79537001-79539772 (+)
BALB/cJ	ENSMUSG00180009939	lncRNA gene	Chr6:80963391-80966163 (+)
C3H/HeJ	ENSMUSG00175039890	lncRNA gene	Chr6:96445735-96448506 (-)
C57BL/6NJ	ENSMUSG00215018088	lncRNA gene	Chr6:80959045-80961816 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034596	sense intronic lncRNA gene	Chr6:80137815-80140541 (+)
CAST/EiJ	ENSTCUG00005008395	lncRNA gene	Chr6:80964146-80966917 (+)
CBA/J	ENSMUSG00210011516	lncRNA gene	Chr6:80777256-80780027 (+)
DBA/2J	ENSMUSG00185046781	lncRNA gene	Chr6:81324397-81327168 (+)
FVB/NJ	ENSMUSG00205027450	lncRNA gene	Chr6:80004980-80007752 (+)
JF1/MsJ	ENSUMUG00000023925	lncRNA gene	Chr6:80380712-80383485 (+)
LP/J	ENSMUSG00230050707	lncRNA gene	Chr6:82465592-82468363 (+)
NOD/ShiLtJ	ENSMUSG00190001804	lncRNA gene	Chr6:80408043-80410815 (+)
NZO/HlLtJ	ENSMUSG00225020479	lncRNA gene	Chr6:84379320-84382093 (+)
PWK/PhJ	ENSLUMG00010006497	lncRNA gene	Chr6:79727218-79729990 (+)
SPRET/EiJ	ENSMSPG00010044858	lncRNA gene	Chr6:81860971-81863746 (+)
WSB/EiJ	ENSIUOG00005019438	lncRNA gene	Chr6:81342520-81345291 (+)

Homology

• Gene Tree
  Gm43920
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43920
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107534 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107534	Ensembl Gene Model | MGI Sequence Detail	2772	C57BL/6J
transcript	ENSMUST00000204953	Ensembl | MGI Sequence Detail	2159	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48