Gm43919 Pseudogene Detail

Summary

• Symbol
  Gm43919
• Name
  predicted gene, 43919

• Feature Type
  pseudogene
• IDs
  MGI:5690311
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:83873941-83874304 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690311	pseudogene	Chr6:83873941-83874304 (+)
129S1/SvImJ	ENSMUSG00200012909	pseudogene	Chr6:80843056-80843419 (+)
A/J	ENSMUSG00195012424	pseudogene	Chr6:80521979-80522342 (+)
AKR/J	ENSMUSG00220002270	pseudogene	Chr6:79471898-79472261 (+)
BALB/cJ	ENSMUSG00180009946	pseudogene	Chr6:80898046-80898409 (+)
C3H/HeJ	ENSMUSG00175039918	pseudogene	Chr6:96513474-96513837 (-)
C57BL/6NJ	ENSMUSG00215018139	pseudogene	Chr6:80893725-80894088 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011966	pseudogene	Chr6:80070894-80071257 (+)
CAST/EiJ	ENSTCUG00005008399	pseudogene	Chr6:80899083-80899446 (+)
CBA/J	ENSMUSG00210011523	pseudogene	Chr6:80711937-80712300 (+)
DBA/2J	ENSMUSG00185046790	pseudogene	Chr6:81259085-81259448 (+)
FVB/NJ	ENSMUSG00205027499	pseudogene	Chr6:79939646-79940009 (+)
JF1/MsJ	ENSUMUG00000023952	pseudogene	Chr6:80315388-80315751 (+)
LP/J	ENSMUSG00230050638	pseudogene	Chr6:82400281-82400644 (+)
NOD/ShiLtJ	ENSMUSG00190001811	pseudogene	Chr6:80342708-80343071 (+)
NZO/HlLtJ	ENSMUSG00225020657	pseudogene	Chr6:84313987-84314350 (+)
PWK/PhJ	ENSLUMG00010006505	pseudogene	Chr6:79662086-79662449 (+)
SPRET/EiJ	ENSMSPG00010044999	pseudogene	Chr6:81797246-81797609 (+)
WSB/EiJ	ENSIUOG00005019449	pseudogene	Chr6:81277213-81277576 (+)

Homology

• Gene Tree
  Gm43919
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43919
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107991 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107991	Ensembl Gene Model | MGI Sequence Detail	364	C57BL/6J
transcript	ENSMUST00000204303	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48