Gm43904 Gene Detail

Summary

• Symbol
  Gm43904
• Name
  predicted gene, 43904

• Feature Type
  lncRNA gene
• IDs
  MGI:5690296
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:87753053-87754560 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690296	lncRNA gene	Chr6:87753053-87754560 (+)
129S1/SvImJ	ENSMUSG00200046354	lncRNA gene	Chr6:84695995-84697332 (+)
A/J	ENSMUSG00195042394	lncRNA gene	Chr6:84399358-84400695 (+)
AKR/J	ENSMUSG00220036069	lncRNA gene	Chr6:83306603-83307941 (+)
BALB/cJ	ENSMUSG00180019276	lncRNA gene	Chr6:84779286-84780624 (+)
C3H/HeJ	ENSMUSG00175039654	lncRNA gene	Chr6:92624364-92625701 (-)
C57BL/6NJ	ENSMUSG00215033195	lncRNA gene	Chr6:84782764-84784101 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018137	lncRNA gene	Chr6:84710087-84711424 (+)
CBA/J	ENSMUSG00210044717	lncRNA gene	Chr6:84594725-84596062 (+)
DBA/2J	ENSMUSG00185044602	lncRNA gene	Chr6:85141955-85143292 (+)
FVB/NJ	ENSMUSG00205043845	lncRNA gene	Chr6:83768227-83769564 (+)
JF1/MsJ	ENSUMUG00000045748	lncRNA gene	Chr6:84076348-84077682 (+)
LP/J	ENSMUSG00230050349	lncRNA gene	Chr6:86276767-86278104 (+)
NOD/ShiLtJ	ENSMUSG00190047262	lncRNA gene	Chr6:84213908-84215245 (+)
NZO/HlLtJ	ENSMUSG00225020840	lncRNA gene	Chr6:88239730-88241067 (+)
PWK/PhJ	ENSLUMG00010034660	lncRNA gene	Chr6:83493457-83494790 (+)
SPRET/EiJ	ENSMSPG00010042610	lncRNA gene	Chr6:85641216-85642551 (+)
WSB/EiJ	ENSIUOG00005033517	lncRNA gene	Chr6:85122224-85123561 (+)

Homology

• Gene Tree
  Gm43904
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107849 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107849	Ensembl Gene Model | MGI Sequence Detail	1508	C57BL/6J
transcript	ENSMUST00000373479	Ensembl | MGI Sequence Detail	663	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57550	Chr6:87753111-87753131 (+)	68 bp