Gm43901 Pseudogene Detail

Summary

• Symbol
  Gm43901
• Name
  predicted gene, 43901

• Feature Type
  pseudogene
• IDs
  MGI:5690293
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:81397787-81398239 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690293	pseudogene	Chr6:81397787-81398239 (-)
129S1/SvImJ	ENSMUSG00200013061	pseudogene	Chr6:78367979-78368431 (-)
A/J	ENSMUSG00195012613	pseudogene	Chr6:78064367-78064819 (-)
AKR/J	ENSMUSG00220002012	pseudogene	Chr6:77019389-77019841 (-)
BALB/cJ	ENSMUSG00180010532	pseudogene	Chr6:78440537-78440989 (-)
C3H/HeJ	ENSMUSG00175039289	pseudogene	Chr6:98990288-98990740 (+)
C57BL/6NJ	ENSMUSG00215015181	pseudogene	Chr6:78408302-78408754 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011956	pseudogene	Chr6:77656667-77657122 (-)
CAST/EiJ	ENSTCUG00005008611	pseudogene	Chr6:78462412-78462864 (-)
CBA/J	ENSMUSG00210011490	pseudogene	Chr6:78229327-78229779 (-)
DBA/2J	ENSMUSG00185001152	pseudogene	Chr6:78782293-78782745 (-)
FVB/NJ	ENSMUSG00205028768	pseudogene	Chr6:77493479-77493931 (-)
JF1/MsJ	ENSUMUG00000021885	pseudogene	Chr6:77830946-77831398 (-)
LP/J	ENSMUSG00230007951	pseudogene	Chr6:79925435-79925887 (-)
NOD/ShiLtJ	ENSMUSG00190002267	pseudogene	Chr6:77882257-77882709 (-)
NZO/HlLtJ	ENSMUSG00225007110	pseudogene	Chr6:81828435-81828887 (-)
PWK/PhJ	ENSLUMG00010006988	pseudogene	Chr6:77201644-77202096 (-)
SPRET/EiJ	ENSMSPG00010000423	pseudogene	Chr6:79321972-79322428 (-)
WSB/EiJ	ENSIUOG00005018559	pseudogene	Chr6:78811473-78811925 (-)

Homology

• Gene Tree
  Gm43901
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43901
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107691 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107691	Ensembl Gene Model | MGI Sequence Detail	453	C57BL/6J
transcript	ENSMUST00000203247	Ensembl | MGI Sequence Detail	453	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48