Gm43838 Gene Detail

Summary

• Symbol
  Gm43838
• Name
  predicted gene 43838

• Feature Type
  lncRNA gene
• IDs
  MGI:5663975
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:64517664-64665195 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  4040 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663975	lncRNA gene	Chr5:64517664-64665195 (+)
129S1/SvImJ	ENSMUSG00200000212	lncRNA gene	Chr5:60131219-60134336 (+)
A/J	ENSMUSG00195000390	lncRNA gene	Chr5:59494881-59497998 (+)
AKR/J	ENSMUSG00220007246	lncRNA gene	Chr5:59631984-59635101 (+)
BALB/cJ	ENSMUSG00180006379	lncRNA gene	Chr5:59283966-59287083 (+)
C3H/HeJ	ENSMUSG00175029936	lncRNA gene	Chr5:61312248-61315365 (+)
C57BL/6NJ	ENSMUSG00215002852	lncRNA gene	Chr5:60062733-60065850 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006045	lincRNA gene	Chr5:57679459-57681478 (+)
CAST/EiJ	ENSTCUG00005000673	lncRNA gene	Chr5:59236418-59239535 (+)
CBA/J	ENSMUSG00210000188	lncRNA gene	Chr5:60222636-60225753 (+)
DBA/2J	ENSMUSG00185005929	lncRNA gene	Chr5:62082671-62085788 (+)
FVB/NJ	ENSMUSG00205011066	lncRNA gene	Chr5:59032181-59035298 (+)
JF1/MsJ	ENSUMUG00000021710	lncRNA gene	Chr5:66570001-66573118 (+)
LP/J	ENSMUSG00230008797	lncRNA gene	Chr5:66746722-66749839 (+)
NOD/ShiLtJ	ENSMUSG00190000633	lncRNA gene	Chr5:59218459-59221576 (+)
NZO/HlLtJ	ENSMUSG00225010501	lncRNA gene	Chr5:71879249-71882366 (+)
PWK/PhJ	ENSLUMG00010004391	lncRNA gene	Chr5:59183211-59186329 (+)
SPRET/EiJ	ENSMSPG00010034239	lncRNA gene	Chr5:60991848-60995349 (+)
WSB/EiJ	ENSIUOG00005019129	lncRNA gene	Chr5:62188698-62191815 (+)

Homology

• Gene Tree
  Gm43838
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43838
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  101

• Ensembl
  ENSMUSG00000105730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105730	Ensembl Gene Model | MGI Sequence Detail	147532	C57BL/6J
transcript	ENSMUST00000371611	Ensembl | MGI Sequence Detail	2801	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm43838:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46397	Chr5:64517708-64517751 (+)	66 bp
Tssr46399	Chr5:64548898-64548925 (+)	31,248 bp
Tssr46400	Chr5:64578775-64578798 (+)	61,123 bp
Tssr46401	Chr5:64645195-64645216 (+)	127,542 bp