Gm43824 Gene Detail

Summary

• Symbol
  Gm43824
• Name
  predicted gene 43824

• Feature Type
  lncRNA gene
• IDs
  MGI:5663961
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:128404304-128680810 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  7006 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663961	lncRNA gene	Chr3:128404304-128680810 (+)
129S1/SvImJ	ENSMUSG00200004377	lncRNA gene	Chr3:125156509-125441920 (+)
A/J	ENSMUSG00195008798	lncRNA gene	Chr3:125295434-125567693 (+)
AKR/J	ENSMUSG00220022802	lncRNA gene	Chr3:123723143-123999309 (+)
BALB/cJ	ENSMUSG00180003987	lncRNA gene	Chr3:125224198-125496447 (+)
C3H/HeJ	ENSMUSG00175014939	lncRNA gene	Chr3:124776166-125057051 (+)
C57BL/6NJ	ENSMUSG00215027402	lncRNA gene	Chr3:125553049-125829250 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005728	lincRNA gene	Chr3:121884679-122137177 (+)
CAST/EiJ	ENSTCUG00005004040	lncRNA gene	Chr3:125862457-126151509 (+)
CBA/J	ENSMUSG00210004688	lncRNA gene	Chr3:125399259-125671455 (+)
DBA/2J	ENSMUSG00185027037	lncRNA gene	Chr3:126006517-126278724 (+)
FVB/NJ	ENSMUSG00205029934	lncRNA gene	Chr3:124346522-124612638 (+)
JF1/MsJ	ENSUMUG00000034064	lncRNA gene	Chr3:124763394-125026863 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001777	lncRNA gene	Chr3:126401126-126677273 (+)
NZO/HlLtJ	ENSMUSG00225004045	lncRNA gene	Chr3:130440418-130716583 (+)
PWK/PhJ	ENSLUMG00010015817	lncRNA gene	Chr3:124784723-125049713 (+)
SPRET/EiJ	ENSMSPG00010013528	lncRNA gene	Chr3:125732343-126007216 (+)
WSB/EiJ	ENSIUOG00005017661	lncRNA gene	Chr3:125582694-125794752 (+)

Homology

• Gene Tree
  Gm43824
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm43824
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106245 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106245	Ensembl Gene Model | MGI Sequence Detail	276507	C57BL/6J
transcript	ENSMUST00000199042	Ensembl | MGI Sequence Detail	2920	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43824:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1042	Chr3:128404587-128404600 (+)	290 bp
Tssr31621	Chr3:128404603-128404612 (+)	304 bp
Tssr31622	Chr3:128404619-128404644 (+)	328 bp
Tssr31623	Chr3:128637427-128637430 (+)	233,125 bp