Gm43698 Gene Detail

Summary

• Symbol
  Gm43698
• Name
  predicted gene 43698

• Feature Type
  lncRNA gene
• IDs
  MGI:5663835
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:67517660-67523998 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  381 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663835	lncRNA gene	Chr5:67517660-67523998 (+)
129S1/SvImJ	ENSMUSG00200036464	lncRNA gene	Chr5:63147857-63154116 (+)
A/J	ENSMUSG00195035680	lncRNA gene	Chr5:62502162-62508423 (+)
AKR/J	ENSMUSG00220004928	lncRNA gene	Chr5:62640065-62646326 (+)
BALB/cJ	ENSMUSG00180024905	lncRNA gene	Chr5:62294958-62301217 (+)
C3H/HeJ	ENSMUSG00175030303	lncRNA gene	Chr5:64322445-64328706 (+)
C57BL/6NJ	ENSMUSG00215006069	lncRNA gene	Chr5:63065110-63071370 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006053	lincRNA gene	Chr5:60672580-60678743 (+)
CAST/EiJ	ENSTCUG00005032431	lncRNA gene	Chr5:62219509-62225582 (+)
CBA/J	ENSMUSG00210023912	lncRNA gene	Chr5:63235313-63241571 (+)
DBA/2J	ENSMUSG00185005723	lncRNA gene	Chr5:65092829-65099088 (+)
FVB/NJ	ENSMUSG00205033455	lncRNA gene	Chr5:62046253-62052286 (+)
JF1/MsJ	ENSUMUG00000022029	lncRNA gene	Chr5:69607446-69613557 (+)
LP/J	ENSMUSG00230009315	lncRNA gene	Chr5:69760403-69766662 (+)
NOD/ShiLtJ	ENSMUSG00190004736	lncRNA gene	Chr5:62226827-62233086 (+)
NZO/HlLtJ	ENSMUSG00225010762	lncRNA gene	Chr5:74866399-74872658 (+)
PWK/PhJ	ENSLUMG00010014079	lncRNA gene	Chr5:62219061-62225172 (+)
SPRET/EiJ	ENSMSPG00010034916	lncRNA gene	Chr5:64004476-64010503 (+)
WSB/EiJ	ENSIUOG00005019351	lncRNA gene	Chr5:65203520-65209599 (+)

Homology

• Gene Tree
  Gm43698
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43698
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000107266 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107266	Ensembl Gene Model | MGI Sequence Detail	6339	C57BL/6J
transcript	ENSMUST00000202390	Ensembl | MGI Sequence Detail	1325	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43698:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46578	Chr5:67517710-67517720 (+)	55 bp