Gm43647 Gene Detail

Summary

• Symbol
  Gm43647
• Name
  predicted gene 43647

• Feature Type
  lncRNA gene
• IDs
  MGI:5663784
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54130987-54199088 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  835 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663784	lncRNA gene	Chr14:54130987-54199088 (-)
129S1/SvImJ	ENSMUSG00200044660	lncRNA gene	Chr14:42721231-42777613 (-)
A/J	ENSMUSG00195034125	lncRNA gene	Chr14:42945045-43001435 (-)
AKR/J	ENSMUSG00220037544	lncRNA gene	Chr14:42272288-42331501 (-)
BALB/cJ	ENSMUSG00180052654	lncRNA gene	Chr14:42568818-42625208 (-)
C3H/HeJ	ENSMUSG00175050631	lncRNA gene	Chr14:44251276-44307663 (-)
C57BL/6NJ	ENSMUSG00215050425	lncRNA gene	Chr14:42453785-42521356 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002875	antisense lncRNA gene	Chr14:45375742-45401906 (-)
CAST/EiJ	ENSTCUG00005049996	lncRNA gene	Chr14:44266626-44322380 (-)
CBA/J	ENSMUSG00210049470	lncRNA gene	Chr14:42928709-42988234 (-)
DBA/2J	ENSMUSG00185055405	lncRNA gene	Chr14:47973059-48029413 (-)
FVB/NJ	ENSMUSG00205041883	lncRNA gene	Chr14:42334745-42390923 (-)
JF1/MsJ	ENSUMUG00000054510	lncRNA gene	Chr14:59241262-59302411 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190049260	lncRNA gene	Chr14:42675992-42732380 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010051947	lncRNA gene	Chr14:42155352-42211713 (-)
SPRET/EiJ	ENSMSPG00010048135	lncRNA gene	Chr14:45555348-45606939 (-)
WSB/EiJ	ENSIUOG00005047864	lncRNA gene	Chr14:42153572-42209945 (-)

Homology

• Gene Tree
  Gm43647
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000105963 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105963	Ensembl Gene Model | MGI Sequence Detail	68102	C57BL/6J
transcript	ENSMUST00000244883	Ensembl | MGI Sequence Detail	1627	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43647:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128531	Chr14:54199051-54199091 (-)	17 bp