Gm43560 Gene Detail

Summary

• Symbol
  Gm43560
• Name
  predicted gene 43560

• Feature Type
  lncRNA gene
• IDs
  MGI:5663697
  NCBI Gene: 115489709
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:144228990-144229762 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663697	lncRNA gene	Chr3:144223110-144240659 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037005	sense intronic lncRNA gene	Chr3:147834044-147834816 (-)
A/J	MGP_AJ_G0036993	sense intronic lncRNA gene	Chr3:142589793-142590565 (-)
AKR/J	MGP_AKRJ_G0036941	sense intronic lncRNA gene	Chr3:146400072-146400844 (-)
BALB/cJ	MGP_BALBcJ_G0036984	sense intronic lncRNA gene	Chr3:142388135-142388907 (-)
C3H/HeJ	MGP_C3HHeJ_G0036671	sense intronic lncRNA gene	Chr3:146709712-146710484 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037497	sense intronic lncRNA gene	Chr3:152924302-152925074 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034548	sense intronic lncRNA gene	Chr3:137734854-137735630 (-)
CAST/EiJ	MGP_CASTEiJ_G0035859	sense intronic lncRNA gene	Chr3:146686202-146686978 (-)
CBA/J	MGP_CBAJ_G0036646	sense intronic lncRNA gene	Chr3:158159220-158159992 (-)
DBA/2J	MGP_DBA2J_G0036821	sense intronic lncRNA gene	Chr3:141747239-141748011 (-)
FVB/NJ	MGP_FVBNJ_G0036771	sense intronic lncRNA gene	Chr3:139149000-139149772 (-)
LP/J	MGP_LPJ_G0036868	sense intronic lncRNA gene	Chr3:149250912-149251684 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036779	sense intronic lncRNA gene	Chr3:166514933-166515705 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037614	sense intronic lncRNA gene	Chr3:146005243-146006015 (-)
PWK/PhJ	MGP_PWKPhJ_G0035551	sense intronic lncRNA gene	Chr3:141562361-141563133 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035360	sense intronic lncRNA gene	Chr3:144170495-144171270 (-)
WSB/EiJ	MGP_WSBEiJ_G0036059	sense intronic lncRNA gene	Chr3:146895893-146896665 (-)

Homology

• Gene Tree
  Gm43560
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106057 (Evidence)
• NCBI Gene
  115489709

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106057	Ensembl Gene Model | MGI Sequence Detail	773	C57BL/6J
transcript	ENSMUST00000198100	Ensembl | MGI Sequence Detail	773	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;