Gm43542 Pseudogene Detail

Summary

• Symbol
  Gm43542
• Name
  predicted gene 43542

• Feature Type
  pseudogene
• IDs
  MGI:5663679
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:116640595-116640973 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663679	pseudogene	Chr3:116640595-116640973 (+)
129S1/SvImJ	ENSMUSG00200026814	pseudogene	Chr3:113287477-113287866 (+)
A/J	ENSMUSG00195016617	pseudogene	Chr3:113545038-113545427 (+)
AKR/J	ENSMUSG00220026678	pseudogene	Chr3:111941778-111942167 (+)
BALB/cJ	ENSMUSG00180031815	pseudogene	Chr3:113488907-113489296 (+)
C3H/HeJ	ENSMUSG00175027276	pseudogene	Chr3:113029806-113030195 (+)
C57BL/6NJ	ENSMUSG00215008020	pseudogene	Chr3:113766194-113766572 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011034	pseudogene	Chr3:110557124-110557508 (+)
CAST/EiJ	ENSTCUG00005033854	pseudogene	Chr3:114034064-114034436 (+)
CBA/J	ENSMUSG00210003136	pseudogene	Chr3:113638260-113638649 (+)
DBA/2J	ENSMUSG00185007919	pseudogene	Chr3:114218515-114218904 (+)
FVB/NJ	ENSMUSG00205029829	pseudogene	Chr3:112567422-112567811 (+)
JF1/MsJ	ENSUMUG00000003136	pseudogene	Chr3:113117703-113118081 (+)
LP/J	ENSMUSG00230012904	pseudogene	Chr3:116148290-116148679 (+)
NOD/ShiLtJ	ENSMUSG00190032928	pseudogene	Chr3:114595072-114595461 (+)
NZO/HlLtJ	ENSMUSG00225004107	pseudogene	Chr3:118640918-118641307 (+)
PWK/PhJ	ENSLUMG00010009941	pseudogene	Chr3:113002527-113002905 (+)
SPRET/EiJ	ENSMSPG00010032646	pseudogene	Chr3:113640278-113640662 (+)
WSB/EiJ	ENSIUOG00005007524	pseudogene	Chr3:113811799-113812188 (+)

Homology

• Gene Tree
  Gm43542
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm43542
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105241 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105241	Ensembl Gene Model | MGI Sequence Detail	379	C57BL/6J
transcript	ENSMUST00000199505	Ensembl | MGI Sequence Detail	379	Not Applicable

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm43542:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31368	Chr3:116638794-116638812 (+)	-1,792 bp