Gm43525 Gene Detail

Summary

• Symbol
  Gm43525
• Name
  predicted gene 43525

• Feature Type
  lncRNA gene
• IDs
  MGI:5663662
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:20362571-20364079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663662	lncRNA gene	Chr3:20362571-20364079 (+)
129S1/SvImJ	ENSMUSG00200018325	lncRNA gene	Chr3:17140955-17142463 (+)
A/J	ENSMUSG00195016702	lncRNA gene	Chr3:17193195-17194703 (+)
AKR/J	ENSMUSG00220009244	lncRNA gene	Chr3:17160054-17161562 (+)
BALB/cJ	ENSMUSG00180001014	lncRNA gene	Chr3:17214887-17216395 (+)
C3H/HeJ	ENSMUSG00175003151	lncRNA gene	Chr3:17213125-17214633 (+)
C57BL/6NJ	ENSMUSG00215001414	lncRNA gene	Chr3:17423132-17424640 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024720	lncRNA gene	Chr3:17144213-17145587 (+)
CBA/J	ENSMUSG00210001958	lncRNA gene	Chr3:17188447-17189955 (+)
DBA/2J	ENSMUSG00185000669	lncRNA gene	Chr3:17406874-17408382 (+)
FVB/NJ	ENSMUSG00205002762	lncRNA gene	Chr3:16709634-16711142 (+)
JF1/MsJ	ENSUMUG00000018568	lncRNA gene	Chr3:17014495-17015863 (+)
LP/J	ENSMUSG00230004452	lncRNA gene	Chr3:19312605-19314113 (+)
NOD/ShiLtJ	ENSMUSG00190002257	lncRNA gene	Chr3:17568852-17570360 (+)
NZO/HlLtJ	ENSMUSG00225007272	lncRNA gene	Chr3:21958620-21960128 (+)
PWK/PhJ	ENSLUMG00010003409	lncRNA gene	Chr3:17036935-17038303 (+)
SPRET/EiJ	ENSMSPG00010001924	lncRNA gene	Chr3:17176191-17177578 (+)
WSB/EiJ	ENSIUOG00005001496	lncRNA gene	Chr3:17457388-17458756 (+)

Homology

• Gene Tree
  Gm43525
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105208 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105208	Ensembl Gene Model | MGI Sequence Detail	1509	C57BL/6J
transcript	ENSMUST00000196460	Ensembl | MGI Sequence Detail	616	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43525:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28570	Chr3:20361098-20361103 (+)	-1,470 bp
Tssr28571	Chr3:20362535-20362542 (+)	-32 bp
Tssr28572	Chr3:20362563-20362584 (+)	3 bp