Gm43446 Gene Detail

Summary

• Symbol
  Gm43446
• Name
  predicted gene 43446

• Feature Type
  lncRNA gene
• IDs
  MGI:5663583
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:143989506-143990676 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663583	lncRNA gene	Chr3:143989506-143990676 (+)
129S1/SvImJ	ENSMUSG00200003529	lncRNA gene	Chr3:140840616-140841708 (+)
A/J	ENSMUSG00195004359	lncRNA gene	Chr3:140995781-140996876 (+)
AKR/J	ENSMUSG00220004031	lncRNA gene	Chr3:139406851-139407946 (+)
BALB/cJ	ENSMUSG00180012455	lncRNA gene	Chr3:140866448-140867543 (+)
C3H/HeJ	ENSMUSG00175020592	lncRNA gene	Chr3:140449873-140450968 (+)
C57BL/6NJ	ENSMUSG00215028076	lncRNA gene	Chr3:141172901-141173996 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005778	lincRNA gene	Chr3:137491571-137492655 (+)
CAST/EiJ	ENSTCUG00005030368	lncRNA gene	Chr3:141568779-141569874 (+)
CBA/J	ENSMUSG00210032604	lncRNA gene	Chr3:141126984-141128079 (+)
DBA/2J	ENSMUSG00185025993	lncRNA gene	Chr3:141728354-141729446 (+)
FVB/NJ	ENSMUSG00205026300	lncRNA gene	Chr3:140016698-140017790 (+)
JF1/MsJ	ENSUMUG00000005969	lncRNA gene	Chr3:140528444-140529539 (+)
LP/J	ENSMUSG00230020484	lncRNA gene	Chr3:143627049-143628141 (+)
NOD/ShiLtJ	ENSMUSG00190005082	lncRNA gene	Chr3:142086348-142087443 (+)
NZO/HlLtJ	ENSMUSG00225003367	lncRNA gene	Chr3:146144158-146145250 (+)
PWK/PhJ	ENSLUMG00010022389	lncRNA gene	Chr3:140404956-140406051 (+)
SPRET/EiJ	ENSMSPG00010008753	lncRNA gene	Chr3:141745732-141746828 (+)
WSB/EiJ	ENSIUOG00005018747	lncRNA gene	Chr3:141193114-141194206 (+)

Homology

• Gene Tree
  Gm43446
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000105197 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105197	Ensembl Gene Model | MGI Sequence Detail	1171	C57BL/6J
transcript	ENSMUST00000197669	Ensembl | MGI Sequence Detail	1171	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43446:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32261	Chr3:143989517-143989542 (+)	24 bp