Gm43376 Gene Detail

Summary

• Symbol
  Gm43376
• Name
  predicted gene 43376

• Feature Type
  lncRNA gene
• IDs
  MGI:5663513
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:55797727-55844120 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  1188 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663513	lncRNA gene	Chr3:55797727-55844120 (+)
129S1/SvImJ	ENSMUSG00200023892	lncRNA gene	Chr3:52650510-52696902 (+)
A/J	ENSMUSG00195033364	lncRNA gene	Chr3:52587205-52633600 (+)
AKR/J	ENSMUSG00220032406	lncRNA gene	Chr3:52648676-52695433 (+)
BALB/cJ	ENSMUSG00180028291	lncRNA gene	Chr3:52666490-52712885 (+)
C3H/HeJ	ENSMUSG00175009131	lncRNA gene	Chr3:52508049-52554442 (+)
C57BL/6NJ	ENSMUSG00215010268	lncRNA gene	Chr3:52945178-52991572 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003366	antisense lncRNA gene	Chr3:49450118-49488459 (+)
CAST/EiJ	ENSTCUG00005010286	lncRNA gene	Chr3:52324529-52364927 (+)
CBA/J	ENSMUSG00210003906	lncRNA gene	Chr3:52629449-52675846 (+)
DBA/2J	ENSMUSG00185028464	lncRNA gene	Chr3:52826890-52873640 (+)
FVB/NJ	ENSMUSG00205010020	lncRNA gene	Chr3:51811727-51856080 (+)
JF1/MsJ	ENSUMUG00000003983	lncRNA gene	Chr3:52289920-52330091 (+)
LP/J	ENSMUSG00230004952	lncRNA gene	Chr3:54805056-54851449 (+)
NOD/ShiLtJ	ENSMUSG00190035746	lncRNA gene	Chr3:52996324-53043088 (+)
NZO/HlLtJ	ENSMUSG00225017239	lncRNA gene	Chr3:57417452-57463845 (+)
PWK/PhJ	ENSLUMG00010005638	lncRNA gene	Chr3:52388181-52428338 (+)
SPRET/EiJ	ENSMSPG00010008087	lncRNA gene	Chr3:53155831-53194574 (+)
WSB/EiJ	ENSIUOG00005009611	lncRNA gene	Chr3:52787523-52834216 (+)

Homology

• Gene Tree
  Gm43376
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000104677 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104677	Ensembl Gene Model | MGI Sequence Detail	46394	C57BL/6J
transcript	ENSMUST00000198939	Ensembl | MGI Sequence Detail	1887	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43376:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29177	Chr3:55797723-55797734 (+)	2 bp