Gm43315 Pseudogene Detail

Summary

• Symbol
  Gm43315
• Name
  predicted gene 43315

• Feature Type
  pseudogene
• IDs
  MGI:5663452
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:56314680-56314992 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663452	pseudogene	Chr5:56314680-56314992 (+)
129S1/SvImJ	ENSMUSG00200000179	pseudogene	Chr5:51866590-51866902 (+)
A/J	ENSMUSG00195000544	pseudogene	Chr5:51237303-51237615 (+)
AKR/J	ENSMUSG00220007186	pseudogene	Chr5:51311904-51312216 (+)
BALB/cJ	ENSMUSG00180006837	pseudogene	Chr5:51009802-51010114 (+)
C3H/HeJ	ENSMUSG00175001801	pseudogene	Chr5:53037900-53038212 (+)
C57BL/6NJ	ENSMUSG00215002891	pseudogene	Chr5:51810704-51811016 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011605	pseudogene	Chr5:49951032-49951343 (+)
CAST/EiJ	ENSTCUG00005000488	pseudogene	Chr5:51158402-51158714 (+)
CBA/J	ENSMUSG00210000255	pseudogene	Chr5:51996526-51996838 (+)
DBA/2J	ENSMUSG00185000194	pseudogene	Chr5:53858907-53859219 (+)
FVB/NJ	ENSMUSG00205003043	pseudogene	Chr5:50849866-50850178 (+)
JF1/MsJ	ENSUMUG00000001075	pseudogene	Chr5:58483379-58483691 (+)
LP/J	ENSMUSG00230010760	pseudogene	Chr5:58542421-58542733 (+)
NOD/ShiLtJ	ENSMUSG00190000495	pseudogene	Chr5:50912001-50912313 (+)
NZO/HlLtJ	ENSMUSG00225002836	pseudogene	Chr5:63649521-63649833 (+)
PWK/PhJ	ENSLUMG00010004548	pseudogene	Chr5:51080892-51081204 (+)
SPRET/EiJ	ENSMSPG00010004070	pseudogene	Chr5:52626765-52627070 (+)
WSB/EiJ	ENSIUOG00005000123	pseudogene	Chr5:53888960-53889272 (+)

Homology

• Gene Tree
  Gm43315
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43315
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105685 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105685	Ensembl Gene Model | MGI Sequence Detail	313	C57BL/6J
transcript	ENSMUST00000198120	Ensembl | MGI Sequence Detail	313	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43315:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46281	Chr5:56314647-56314648 (+)	-32 bp