Gm43309 Pseudogene Detail

Summary

• Symbol
  Gm43309
• Name
  predicted gene 43309

• Feature Type
  pseudogene
• IDs
  MGI:5663446
  NCBI Gene: 118567395
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:85866308-85866943 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663446	pseudogene	Chr6:85866306-85866972 (+)
129S1/SvImJ	ENSMUSG00200045643	pseudogene	Chr6:82822962-82823597 (+)
A/J	ENSMUSG00195042433	pseudogene	Chr6:82507267-82507902 (+)
AKR/J	ENSMUSG00220036645	pseudogene	Chr6:81417774-81418409 (+)
BALB/cJ	ENSMUSG00180020714	pseudogene	Chr6:82892606-82893241 (+)
C3H/HeJ	ENSMUSG00175042203	pseudogene	Chr6:94521431-94522066 (-)
C57BL/6NJ	ENSMUSG00215037807	pseudogene	Chr6:82888001-82888636 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011972	pseudogene	Chr6:81931351-81931809 (+)
CAST/EiJ	ENSTCUG00005018913	pseudogene	Chr6:82823254-82823889 (+)
CBA/J	ENSMUSG00210047182	pseudogene	Chr6:82698448-82699083 (+)
DBA/2J	ENSMUSG00185047152	pseudogene	Chr6:83245592-83246227 (+)
FVB/NJ	ENSMUSG00205041464	pseudogene	Chr6:81876458-81877093 (+)
JF1/MsJ	ENSUMUG00000044458	pseudogene	Chr6:82193813-82194448 (+)
LP/J	ENSMUSG00230051027	pseudogene	Chr6:84379609-84380244 (+)
NOD/ShiLtJ	ENSMUSG00190047303	pseudogene	Chr6:82322215-82322850 (+)
NZO/HlLtJ	ENSMUSG00225020263	pseudogene	Chr6:86343418-86344053 (+)
PWK/PhJ	ENSLUMG00010006584	pseudogene	Chr6:81604877-81605512 (+)
SPRET/EiJ	ENSMSPG00010045284	pseudogene	Chr6:83758741-83759376 (+)
WSB/EiJ	ENSIUOG00005035095	pseudogene	Chr6:83227475-83228110 (+)

Homology

• Gene Tree
  Gm43309
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000106784 (Evidence)
• NCBI Gene
  118567395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106784	Ensembl Gene Model | MGI Sequence Detail	636	C57BL/6J
transcript	ENSMUST00000200837	Ensembl | MGI Sequence Detail	458	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm43309:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57428	Chr6:85866291-85866293 (+)	-16 bp