Gm43247 Pseudogene Detail

Summary

• Symbol
  Gm43247
• Name
  predicted gene 43247

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5663384
  NCBI Gene: 108169063
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:113208352-113208825 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663384	pseudogene	Chr5:113208352-113208859 (+)
129S1/SvImJ	ENSMUSG00200023848	pseudogene	Chr5:106952392-106952872 (+)
A/J	no annotation
AKR/J	ENSMUSG00220052269	pseudogene	Chr5:105976922-105977402 (+)
BALB/cJ	ENSMUSG00180047255	pseudogene	Chr5:106602785-106603265 (+)
C3H/HeJ	ENSMUSG00175047457	pseudogene	Chr5:108584009-108584489 (+)
C57BL/6NJ	ENSMUSG00215038962	pseudogene	Chr5:106607979-106608459 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210045219	pseudogene	Chr5:107336079-107336559 (+)
DBA/2J	ENSMUSG00185048975	pseudogene	Chr5:110386484-110386964 (+)
FVB/NJ	ENSMUSG00205051993	pseudogene	Chr5:106240541-106241021 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230049824	pseudogene	Chr5:114490658-114491138 (+)
NOD/ShiLtJ	ENSMUSG00190048820	pseudogene	Chr5:106276127-106276607 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010048175	pseudogene	Chr5:108397238-108397718 (+)
WSB/EiJ	ENSIUOG00005044646	pseudogene	Chr5:108977525-108978005 (+)

Homology

• Gene Tree
  Gm43247
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm43247
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  2

• Ensembl
  ENSMUSG00000105406 (Evidence)
• NCBI Gene
  108169063

Representative Sequences			Length	Strain/Species
genomic	108169063	NCBI Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	XM_036165690	RefSeq | MGI Sequence Detail	474	C57BL/6J
polypeptide	XP_036021583	RefSeq | MGI Sequence Detail	143	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43247:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48009	Chr5:113208337-113208355 (+)	-6 bp