Gm43138 Gene Detail

Summary

• Symbol
  Gm43138
• Name
  predicted gene 43138

• Feature Type
  lncRNA gene
• IDs
  MGI:5663275
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:110354446-110355153 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663275	lncRNA gene	Chr5:110354446-110355153 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037039	sense intronic lncRNA gene	Chr5:112648912-112649619 (+)
A/J	MGP_AJ_G0037027	sense intronic lncRNA gene	Chr5:108283522-108284229 (+)
AKR/J	MGP_AKRJ_G0036975	sense intronic lncRNA gene	Chr5:111734692-111735399 (+)
BALB/cJ	MGP_BALBcJ_G0037018	sense intronic lncRNA gene	Chr5:109652587-109653294 (+)
C3H/HeJ	MGP_C3HHeJ_G0036705	sense intronic lncRNA gene	Chr5:112158976-112159683 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037531	sense intronic lncRNA gene	Chr5:117095100-117095807 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035893	sense intronic lncRNA gene	Chr5:111020475-111021182 (+)
CBA/J	MGP_CBAJ_G0036680	sense intronic lncRNA gene	Chr5:121500176-121500883 (+)
DBA/2J	MGP_DBA2J_G0036855	sense intronic lncRNA gene	Chr5:108350652-108351359 (+)
FVB/NJ	MGP_FVBNJ_G0036805	sense intronic lncRNA gene	Chr5:107026582-107027289 (+)
LP/J	MGP_LPJ_G0036902	sense intronic lncRNA gene	Chr5:113210286-113210993 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036812	sense intronic lncRNA gene	Chr5:126145397-126146104 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037648	sense intronic lncRNA gene	Chr5:111167305-111168012 (+)
PWK/PhJ	MGP_PWKPhJ_G0035585	sense intronic lncRNA gene	Chr5:106939505-106940206 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035394	sense intronic lncRNA gene	Chr5:108632502-108633211 (+)
WSB/EiJ	MGP_WSBEiJ_G0036093	sense intronic lncRNA gene	Chr5:111618306-111619013 (+)

Homology

• Gene Tree
  Gm43138
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104720 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104720	Ensembl Gene Model | MGI Sequence Detail	708	C57BL/6J
transcript	ENSMUST00000199123	Ensembl | MGI Sequence Detail	708	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43138:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47880	Chr5:110352640-110352674 (+)	-1,789 bp