Gm43101 Gene Detail

Summary

• Symbol
  Gm43101
• Name
  predicted gene 43101

• Feature Type
  lncRNA gene
• IDs
  MGI:5663238
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:75888098-75909603 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  773 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663238	lncRNA gene	Chr5:75888098-75909603 (+)
129S1/SvImJ	ENSMUSG00200001311	lncRNA gene	Chr5:71578571-71587015 (+)
A/J	ENSMUSG00195010670	lncRNA gene	Chr5:70875288-70883732 (+)
AKR/J	ENSMUSG00220015043	lncRNA gene	Chr5:70988572-70997020 (+)
BALB/cJ	ENSMUSG00180026067	lncRNA gene	Chr5:70631224-70639680 (+)
C3H/HeJ	ENSMUSG00175004231	lncRNA gene	Chr5:72693795-72702234 (+)
C57BL/6NJ	ENSMUSG00215000447	lncRNA gene	Chr5:71464494-71472940 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006066	lincRNA gene	Chr5:68648353-68656551 (+)
CAST/EiJ	ENSTCUG00005032588	lncRNA gene	Chr5:70431464-70439649 (+)
CBA/J	ENSMUSG00210000529	lncRNA gene	Chr5:71631764-71640207 (+)
DBA/2J	ENSMUSG00185017135	lncRNA gene	Chr5:73461748-73470189 (+)
FVB/NJ	ENSMUSG00205030119	lncRNA gene	Chr5:70398391-70406835 (+)
JF1/MsJ	ENSUMUG00000006618	lncRNA gene	Chr5:77952684-77960506 (+)
LP/J	ENSMUSG00230022545	lncRNA gene	Chr5:78152589-78161035 (+)
NOD/ShiLtJ	ENSMUSG00190004220	lncRNA gene	Chr5:70582266-70590710 (+)
NZO/HlLtJ	ENSMUSG00225034358	lncRNA gene	Chr5:83199219-83207663 (+)
PWK/PhJ	ENSLUMG00010014608	lncRNA gene	Chr5:70529499-70537646 (+)
SPRET/EiJ	ENSMSPG00010010364	lncRNA gene	Chr5:72511746-72519902 (+)
WSB/EiJ	ENSIUOG00005018579	lncRNA gene	Chr5:73398031-73406174 (+)

Homology

• Gene Tree
  Gm43101
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Spontaneous
  2
• Genomic Mutations
  4 involving Gm43101
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000106754 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106754	Ensembl Gene Model | MGI Sequence Detail	21506	C57BL/6J
transcript	ENSMUST00000201733	Ensembl | MGI Sequence Detail	1261	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:233978 Mizuno S, et al., Peri-implantation lethality in mice carrying megabase-scale deletion on 5qc3.3 is caused by Exoc1 null mutation. Sci Rep. 2015;5:13632

TSS for Gm43101:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46712	Chr5:75895478-75895495 (+)	7,389 bp
Tssr46713	Chr5:75895500-75895516 (+)	7,410 bp