Gm43016 Gene Detail

Summary

• Symbol
  Gm43016
• Name
  predicted gene 43016

• Feature Type
  lncRNA gene
• IDs
  MGI:5663153
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:50700984-50846563 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  754 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663153	lncRNA gene	Chr5:50700984-50846563 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006637	lincRNA gene	Chr5:49419217-49575206 (+)
A/J	MGP_AJ_G0006631	lincRNA gene	Chr5:47694755-47851483 (+)
AKR/J	MGP_AKRJ_G0006601	lincRNA gene	Chr5:49336721-49485749 (+)
BALB/cJ	MGP_BALBcJ_G0006606	lincRNA gene	Chr5:48179394-48322799 (+)
C3H/HeJ	MGP_C3HHeJ_G0006553	lincRNA gene	Chr5:49488911-49644990 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006771	lincRNA gene	Chr5:51563180-51711336 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006033	lincRNA gene	Chr5:44550627-44686743 (+)
CAST/EiJ	MGP_CASTEiJ_G0006475	lincRNA gene	Chr5:48456409-48604623 (+)
CBA/J	MGP_CBAJ_G0006534	lincRNA gene	Chr5:53099730-53250152 (+)
DBA/2J	MGP_DBA2J_G0006555	lincRNA gene	Chr5:47768783-47916204 (+)
FVB/NJ	MGP_FVBNJ_G0006578	lincRNA gene	Chr5:47110848-47250573 (+)
LP/J	MGP_LPJ_G0006638	lincRNA gene	Chr5:49891882-50057350 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006562	lincRNA gene	Chr5:54176185-54334730 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006773	lincRNA gene	Chr5:48856891-49003450 (+)
PWK/PhJ	MGP_PWKPhJ_G0006414	lincRNA gene	Chr5:46829100-46974038 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006322	lincRNA gene	Chr5:48220231-48365996 (+)
WSB/EiJ	MGP_WSBEiJ_G0006527	lincRNA gene	Chr5:48875527-49022515 (+)

Homology

• Gene Tree
  Gm43016
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43016
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105320 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105320	Ensembl Gene Model | MGI Sequence Detail	145580	C57BL/6J
transcript	ENSMUST00000196628	Ensembl | MGI Sequence Detail	3150	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43016:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46161	Chr5:50700988-50701017 (+)	19 bp