Gm43016 Gene Detail

Summary

• Symbol
  Gm43016
• Name
  predicted gene 43016

• Feature Type
  lncRNA gene
• IDs
  MGI:5663153
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:50700780-50980956 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  8779 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663153	lncRNA gene	Chr5:50700780-50980956 (+)
129S1/SvImJ	ENSMUSG00200001592	lncRNA gene	Chr5:46227944-46379008 (+)
A/J	ENSMUSG00195016064	lncRNA gene	Chr5:45610092-45755712 (+)
AKR/J	ENSMUSG00220000807	lncRNA gene	Chr5:45670020-45825475 (+)
BALB/cJ	ENSMUSG00180006765	lncRNA gene	Chr5:45380845-45524187 (+)
C3H/HeJ	ENSMUSG00175015604	lncRNA gene	Chr5:47423064-47568656 (+)
C57BL/6NJ	ENSMUSG00215001800	lncRNA gene	Chr5:46174852-46320450 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006033	lincRNA gene	Chr5:44550627-44686743 (+)
CAST/EiJ	ENSTCUG00005003279	lncRNA gene	Chr5:45541425-45686554 (+)
CBA/J	ENSMUSG00210024704	lncRNA gene	Chr5:46360895-46506523 (+)
DBA/2J	ENSMUSG00185001781	lncRNA gene	Chr5:48239249-48384840 (+)
FVB/NJ	ENSMUSG00205003031	lncRNA gene	Chr5:45167917-45310967 (+)
JF1/MsJ	ENSUMUG00000000780	lncRNA gene	Chr5:52831907-52980912 (+)
LP/J	ENSMUSG00230011274	lncRNA gene	Chr5:52910090-53061285 (+)
NOD/ShiLtJ	ENSMUSG00190000880	lncRNA gene	Chr5:45332787-45481773 (+)
NZO/HlLtJ	ENSMUSG00225028480	lncRNA gene	Chr5:58046854-58195831 (+)
PWK/PhJ	ENSLUMG00010001588	lncRNA gene	Chr5:45488031-45637201 (+)
SPRET/EiJ	ENSMSPG00010013232	lncRNA gene	Chr5:46933171-47080080 (+)
WSB/EiJ	ENSIUOG00005019917	lncRNA gene	Chr5:48299316-48446963 (+)

Homology

• Gene Tree
  Gm43016
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43016
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000105320 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105320	Ensembl Gene Model | MGI Sequence Detail	280177	C57BL/6J
transcript	ENSMUST00000196628	Ensembl | MGI Sequence Detail	3150	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43016:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46161	Chr5:50700988-50701017 (+)	223 bp
Tssr46162	Chr5:50978778-50978781 (+)	278,000 bp