Gm43001 Gene Detail

Summary

• Symbol
  Gm43001
• Name
  predicted gene 43001

• Feature Type
  lncRNA gene
• IDs
  MGI:5663138
  NCBI Gene: 108169071
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:129438739-129458304 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  719 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663138	lncRNA gene	Chr5:129438739-129458304 (+)
129S1/SvImJ	ENSMUSG00200046848	lncRNA gene	Chr5:123186476-123187635 (+)
A/J	ENSMUSG00195050455	lncRNA gene	Chr5:122721879-122723038 (+)
AKR/J	ENSMUSG00220050459	lncRNA gene	Chr5:122195872-122197031 (+)
BALB/cJ	ENSMUSG00180044576	lncRNA gene	Chr5:122829290-122830449 (+)
C3H/HeJ	ENSMUSG00175042247	lncRNA gene	Chr5:124795589-124796748 (+)
C57BL/6NJ	ENSMUSG00215049032	lncRNA gene	Chr5:122857615-122858774 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006215	lincRNA gene	Chr5:122237721-122238885 (+)
CAST/EiJ	ENSTCUG00005010892	lncRNA gene	Chr5:122068263-122069422 (+)
CBA/J	ENSMUSG00210007918	lncRNA gene	Chr5:123546284-123547443 (+)
DBA/2J	ENSMUSG00185008440	lncRNA gene	Chr5:126598169-126599328 (+)
FVB/NJ	ENSMUSG00205046625	lncRNA gene	Chr5:122480550-122481709 (+)
JF1/MsJ	ENSUMUG00000054166	lncRNA gene	Chr5:129481282-129482441 (+)
LP/J	ENSMUSG00230048367	lncRNA gene	Chr5:130702392-130703551 (+)
NOD/ShiLtJ	ENSMUSG00190049160	lncRNA gene	Chr5:122508185-122509344 (+)
NZO/HlLtJ	ENSMUSG00225014675	lncRNA gene	Chr5:138402685-138403844 (+)
PWK/PhJ	ENSLUMG00010018566	lncRNA gene	Chr5:121367227-121368465 (+)
SPRET/EiJ	ENSMSPG00010034503	lncRNA gene	Chr5:124703599-124704756 (+)
WSB/EiJ	ENSIUOG00005036770	lncRNA gene	Chr5:125180960-125182119 (+)

Homology

• Gene Tree
  Gm43001
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm43001
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51

• Ensembl
  ENSMUSG00000104681 (Evidence)
• NCBI Gene
  108169071

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104681	Ensembl Gene Model | MGI Sequence Detail	19566	C57BL/6J
transcript	ENSMUST00000282979	Ensembl | MGI Sequence Detail	1597	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43001:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49005	Chr5:129440607-129440645 (+)	1,887 bp