Gm42984 Gene Detail

Summary

• Symbol
  Gm42984
• Name
  predicted gene 42984

• Feature Type
  lncRNA gene
• IDs
  MGI:5663121
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:44383929-44440444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  1903 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663121	lncRNA gene	Chr5:44383929-44440444 (+)
129S1/SvImJ	ENSMUSG00200033739	lncRNA gene	Chr5:39866362-39883350 (+)
A/J	ENSMUSG00195030631	lncRNA gene	Chr5:39271766-39288757 (+)
AKR/J	ENSMUSG00220002421	lncRNA gene	Chr5:39308476-39325472 (+)
BALB/cJ	ENSMUSG00180024944	lncRNA gene	Chr5:39099737-39116732 (+)
C3H/HeJ	ENSMUSG00175015860	lncRNA gene	Chr5:41072799-41089788 (+)
C57BL/6NJ	ENSMUSG00215006820	lncRNA gene	Chr5:39835251-39852211 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003668	antisense lncRNA gene	Chr5:38609240-38626058 (+)
CAST/EiJ	ENSTCUG00005025342	lncRNA gene	Chr5:39202849-39219827 (+)
CBA/J	ENSMUSG00210005213	lncRNA gene	Chr5:40032497-40049488 (+)
DBA/2J	ENSMUSG00185001798	lncRNA gene	Chr5:41910696-41927692 (+)
FVB/NJ	ENSMUSG00205021521	lncRNA gene	Chr5:38820664-38837651 (+)
JF1/MsJ	ENSUMUG00000003100	lncRNA gene	Chr5:46481852-46498772 (+)
LP/J	ENSMUSG00230002752	lncRNA gene	Chr5:46566280-46583270 (+)
NOD/ShiLtJ	ENSMUSG00190003337	lncRNA gene	Chr5:39107277-39124266 (+)
NZO/HlLtJ	ENSMUSG00225028606	lncRNA gene	Chr5:51722144-51739127 (+)
PWK/PhJ	ENSLUMG00010023261	lncRNA gene	Chr5:39150245-39167149 (+)
SPRET/EiJ	ENSMSPG00010012839	lncRNA gene	Chr5:40429735-40446501 (+)
WSB/EiJ	ENSIUOG00005019233	lncRNA gene	Chr5:41988884-42005792 (+)

Homology

• Gene Tree
  Gm42984
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38

• Ensembl
  ENSMUSG00000104784 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104784	Ensembl Gene Model | MGI Sequence Detail	56516	C57BL/6J
transcript	ENSMUST00000334513	Ensembl | MGI Sequence Detail	1218	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42984:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46133	Chr5:44384079-44384090 (+)	156 bp
Tssr46134	Chr5:44384122-44384160 (+)	212 bp