Gm42946 Gene Detail

Summary

• Symbol
  Gm42946
• Name
  predicted gene 42946

• Feature Type
  lncRNA gene
• IDs
  MGI:5663083
  NCBI Gene: 118567348
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:156351957-156354526 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663083	lncRNA gene	Chr3:156267996-156369724 (+)
129S1/SvImJ	ENSMUSG00200000135	unclassified gene	Chr3:153347584-153350151 (+)
A/J	ENSMUSG00195002772	unclassified gene	Chr3:153466607-153469174 (+)
AKR/J	ENSMUSG00220011086	unclassified gene	Chr3:151888683-151891250 (+)
BALB/cJ	ENSMUSG00180006780	unclassified gene	Chr3:153318328-153320895 (+)
C3H/HeJ	ENSMUSG00175003304	unclassified gene	Chr3:152934888-152937455 (+)
C57BL/6NJ	ENSMUSG00215004354	unclassified gene	Chr3:153553217-153555787 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001126	unclassified gene	Chr3:149528642-149531223 (+)
CAST/EiJ	ENSTCUG00005000050	unclassified gene	Chr3:153999712-154002267 (+)
CBA/J	ENSMUSG00210000383	unclassified gene	Chr3:153567618-153570185 (+)
DBA/2J	ENSMUSG00185000083	unclassified gene	Chr3:154218234-154220801 (+)
FVB/NJ	ENSMUSG00205009619	unclassified gene	Chr3:152476546-152479113 (+)
JF1/MsJ	ENSUMUG00000000071	unclassified gene	Chr3:152976363-152978902 (+)
LP/J	ENSMUSG00230009926	unclassified gene	Chr3:156096481-156099048 (+)
NOD/ShiLtJ	ENSMUSG00190007544	unclassified gene	Chr3:154564749-154567316 (+)
NZO/HlLtJ	ENSMUSG00225006414	unclassified gene	Chr3:158612736-158615303 (+)
PWK/PhJ	ENSLUMG00010001860	unclassified gene	Chr3:152911625-152914192 (+)
SPRET/EiJ	ENSMSPG00010000327	unclassified gene	Chr3:154265391-154267938 (+)
WSB/EiJ	ENSIUOG00005003444	unclassified gene	Chr3:153716993-153719560 (+)

Homology

• Gene Tree
  Gm42946
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104696 (Evidence)
• NCBI Gene
  118567348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104696	Ensembl Gene Model | MGI Sequence Detail	2570	C57BL/6J
transcript	XR_004941600	RefSeq | MGI Sequence Detail	81943	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42946:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32483	Chr3:156352270-156352273 (+)	315 bp