Gm42921 Gene Detail

Summary

• Symbol
  Gm42921
• Name
  predicted gene 42921

• Feature Type
  lncRNA gene
• IDs
  MGI:5663058
  NCBI Gene: 118568586
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:37813648-37821446 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  350 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663058	lncRNA gene	Chr3:37722972-37902453 (+)
129S1/SvImJ	ENSMUSG00200007023	lncRNA gene	Chr3:34560422-34566692 (+)
A/J	ENSMUSG00195001426	lncRNA gene	Chr3:34524197-34530440 (+)
AKR/J	ENSMUSG00220000745	lncRNA gene	Chr3:34590996-34597235 (+)
BALB/cJ	ENSMUSG00180002650	lncRNA gene	Chr3:34670280-34676542 (+)
C3H/HeJ	ENSMUSG00175003951	lncRNA gene	Chr3:34556608-34562852 (+)
C57BL/6NJ	ENSMUSG00215001529	lncRNA gene	Chr3:34944346-34950608 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005604	lincRNA gene	Chr3:32599766-32605948 (+)
CAST/EiJ	ENSTCUG00005001177	lncRNA gene	Chr3:34406286-34412535 (+)
CBA/J	ENSMUSG00210002053	lncRNA gene	Chr3:34611708-34617951 (+)
DBA/2J	ENSMUSG00185001812	lncRNA gene	Chr3:34816949-34823220 (+)
FVB/NJ	ENSMUSG00205000700	lncRNA gene	Chr3:33988627-33994890 (+)
JF1/MsJ	ENSUMUG00000000772	lncRNA gene	Chr3:34357295-34363558 (+)
LP/J	ENSMUSG00230024802	lncRNA gene	Chr3:36803325-36809595 (+)
NOD/ShiLtJ	ENSMUSG00190002001	lncRNA gene	Chr3:34858125-34864370 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010000798	lncRNA gene	Chr3:34401690-34407956 (+)
SPRET/EiJ	ENSMSPG00010000700	lncRNA gene	Chr3:34799877-34806165 (+)
WSB/EiJ	ENSIUOG00005014464	lncRNA gene	Chr3:34859459-34865701 (+)

Homology

• Gene Tree
  Gm42921
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm42921
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  63
• RefSeq
  1

• Ensembl
  ENSMUSG00000106441 (Evidence)
• NCBI Gene
  118568586

Representative Sequences			Length	Strain/Species
genomic	118568586	NCBI Gene Model | MGI Sequence Detail	7799	C57BL/6J
transcript	XR_004941461	RefSeq | MGI Sequence Detail	2340	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:157707 Puligilla C, et al., Sox2 induces neuronal formation in the developing mammalian cochlea. J Neurosci. 2010 Jan 13;30(2):714-22

TSS for Gm42921:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28926	Chr3:37815364-37815382 (+)	1,725 bp