Gm42918 Gene Detail

Summary

• Symbol
  Gm42918
• Name
  predicted gene 42918

• Feature Type
  lncRNA gene
• IDs
  MGI:5663055
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:121523534-121525168 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663055	lncRNA gene	Chr5:121523534-121525168 (+)
129S1/SvImJ	ENSMUSG00200031324	lncRNA gene	Chr5:115264364-115265938 (+)
A/J	ENSMUSG00195012322	lncRNA gene	Chr5:114785632-114787207 (+)
AKR/J	ENSMUSG00220047747	lncRNA gene	Chr5:114284880-114286462 (+)
BALB/cJ	ENSMUSG00180042243	lncRNA gene	Chr5:114900194-114901768 (+)
C3H/HeJ	ENSMUSG00175032361	lncRNA gene	Chr5:116897442-116899016 (+)
C57BL/6NJ	ENSMUSG00215043950	lncRNA gene	Chr5:114930570-114932152 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003758	antisense lncRNA gene	Chr5:114406079-114407645 (+)
CAST/EiJ	ENSTCUG00005042330	lncRNA gene	Chr5:114172694-114174270 (+)
CBA/J	ENSMUSG00210010716	lncRNA gene	Chr5:115648316-115649890 (+)
DBA/2J	ENSMUSG00185054758	lncRNA gene	Chr5:118706889-118708475 (+)
FVB/NJ	ENSMUSG00205046278	lncRNA gene	Chr5:114560177-114561751 (+)
JF1/MsJ	ENSUMUG00000054811	lncRNA gene	Chr5:121559461-121561046 (+)
LP/J	ENSMUSG00230047585	lncRNA gene	Chr5:122786531-122788105 (+)
NOD/ShiLtJ	ENSMUSG00190047809	lncRNA gene	Chr5:114596234-114597808 (+)
NZO/HlLtJ	ENSMUSG00225018494	lncRNA gene	Chr5:130463503-130465077 (+)
PWK/PhJ	ENSLUMG00010043342	lncRNA gene	Chr5:113468063-113469647 (+)
SPRET/EiJ	ENSMSPG00010046839	lncRNA gene	Chr5:116778457-116780015 (+)
WSB/EiJ	ENSIUOG00005020096	lncRNA gene	Chr5:117278748-117280325 (+)

Homology

• Gene Tree
  Gm42918
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000106209 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106209	Ensembl Gene Model | MGI Sequence Detail	1635	C57BL/6J
transcript	ENSMUST00000199249	Ensembl | MGI Sequence Detail	1635	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42918:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48570	Chr5:121523511-121523516 (+)	-20 bp
Tssr48571	Chr5:121523537-121523542 (+)	6 bp