Gm42912 Gene Detail

Summary

• Symbol
  Gm42912
• Name
  predicted gene 42912

• Feature Type
  lncRNA gene
• IDs
  MGI:5663049
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:88941693-88961351 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  648 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663049	lncRNA gene	Chr5:88941693-88961351 (+)
129S1/SvImJ	ENSMUSG00200010262	lncRNA gene	Chr5:84670448-84690026 (+)
A/J	ENSMUSG00195026498	lncRNA gene	Chr5:83843252-83862840 (+)
AKR/J	ENSMUSG00220012666	lncRNA gene	Chr5:83986539-84006139 (+)
BALB/cJ	ENSMUSG00180028578	lncRNA gene	Chr5:83670168-83689749 (+)
C3H/HeJ	ENSMUSG00175046499	lncRNA gene	Chr5:85761967-85781545 (+)
C57BL/6NJ	ENSMUSG00215034813	lncRNA gene	Chr5:84536283-84555862 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006083	lincRNA gene	Chr5:82067980-82086966 (+)
CAST/EiJ	ENSTCUG00005039398	lncRNA gene	Chr5:83472630-83492257 (+)
CBA/J	ENSMUSG00210006914	lncRNA gene	Chr5:84565403-84584974 (+)
DBA/2J	ENSMUSG00185041897	lncRNA gene	Chr5:86479794-86499376 (+)
FVB/NJ	ENSMUSG00205031088	lncRNA gene	Chr5:83378608-83398185 (+)
JF1/MsJ	ENSUMUG00000000982	lncRNA gene	Chr5:90837634-90857295 (+)
LP/J	ENSMUSG00230028095	lncRNA gene	Chr5:91196936-91216530 (+)
NOD/ShiLtJ	ENSMUSG00190042614	lncRNA gene	Chr5:83433701-83453282 (+)
NZO/HlLtJ	ENSMUSG00225010360	lncRNA gene	Chr5:96335293-96354975 (+)
PWK/PhJ	ENSLUMG00010030131	lncRNA gene	Chr5:83498731-83518283 (+)
SPRET/EiJ	ENSMSPG00010036866	lncRNA gene	Chr5:85908800-85928987 (+)
WSB/EiJ	ENSIUOG00005030373	lncRNA gene	Chr5:86462323-86481886 (+)

Homology

• Gene Tree
  Gm42912
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm42912
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105640 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105640	Ensembl Gene Model | MGI Sequence Detail	19659	C57BL/6J
transcript	ENSMUST00000197195	Ensembl | MGI Sequence Detail	800	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm42912:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47044	Chr5:88941724-88941733 (+)	36 bp
Tssr47045	Chr5:88941745-88941756 (+)	58 bp
Tssr47046	Chr5:88941792-88941795 (+)	101 bp
Tssr47047	Chr5:88941801-88941804 (+)	110 bp