Gm42859 Pseudogene Detail

Summary

• Symbol
  Gm42859
• Name
  predicted gene 42859

• Feature Type
  pseudogene
• IDs
  MGI:5662996
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:145346458-145346650 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662996	pseudogene	Chr5:145346458-145346650 (+)
129S1/SvImJ	ENSMUSG00200042038	pseudogene	Chr5:139188399-139188591 (+)
A/J	ENSMUSG00195045459	pseudogene	Chr5:138843891-138844083 (+)
AKR/J	ENSMUSG00220023635	pseudogene	Chr5:138094462-138094654 (+)
BALB/cJ	ENSMUSG00180034513	pseudogene	Chr5:138945818-138946010 (+)
C3H/HeJ	ENSMUSG00175047990	pseudogene	Chr5:140871275-140871467 (+)
C57BL/6NJ	ENSMUSG00215041369	pseudogene	Chr5:138796502-138796694 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037943	pseudogene	Chr5:138248717-138248909 (+)
CBA/J	ENSMUSG00210024493	pseudogene	Chr5:139689916-139690108 (+)
DBA/2J	ENSMUSG00185043029	pseudogene	Chr5:142674186-142674378 (+)
FVB/NJ	ENSMUSG00205044678	pseudogene	Chr5:138489937-138490129 (+)
JF1/MsJ	ENSUMUG00000052934	pseudogene	Chr5:145548824-145549016 (+)
LP/J	ENSMUSG00230030037	pseudogene	Chr5:146792054-146792246 (+)
NOD/ShiLtJ	ENSMUSG00190047153	pseudogene	Chr5:138628562-138628754 (+)
NZO/HlLtJ	ENSMUSG00225009604	pseudogene	Chr5:154264993-154265185 (+)
PWK/PhJ	ENSLUMG00010020790	pseudogene	Chr5:137265107-137265299 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005040817	pseudogene	Chr5:141190654-141190846 (+)

Homology

• Gene Tree
  Gm42859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm42859
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105764 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105764	Ensembl Gene Model | MGI Sequence Detail	193	C57BL/6J
transcript	ENSMUST00000199572	Ensembl | MGI Sequence Detail	193	Not Applicable

References

• Summaries
  All 13

  Phenotypes 10
• Earliest
  J:263525 Scheer N, et al., In vivo responses of the human and murine pregnane X receptor to dexamethasone in mice. Drug Metab Dispos. 2010 Jul;38(7):1046-53
• Latest
  J:345093 Heintz MM, et al., Human CYP2B6 produces oxylipins from polyunsaturated fatty acids and reduces diet-induced obesity. PLoS One. 2022;17(12):e0277053