Gm42809 Gene Detail

Summary

• Symbol
  Gm42809
• Name
  predicted gene 42809

• Feature Type
  lncRNA gene
• IDs
  MGI:5662946
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:89820223-89821360 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662946	lncRNA gene	Chr3:89820223-89821360 (+)
129S1/SvImJ	ENSMUSG00200039797	lncRNA gene	Chr3:86675548-86676685 (+)
A/J	ENSMUSG00195053524	lncRNA gene	Chr3:86690695-86691832 (+)
AKR/J	ENSMUSG00220051838	lncRNA gene	Chr3:86645201-86646338 (+)
BALB/cJ	ENSMUSG00180049946	lncRNA gene	Chr3:86782321-86783458 (+)
C3H/HeJ	ENSMUSG00175048070	lncRNA gene	Chr3:86623262-86624399 (+)
C57BL/6NJ	ENSMUSG00215050084	lncRNA gene	Chr3:87063302-87064439 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003393	antisense lncRNA gene	Chr3:82661120-82662252 (+)
CAST/EiJ	ENSTCUG00005048423	lncRNA gene	Chr3:86143142-86144279 (+)
CBA/J	ENSMUSG00210048778	lncRNA gene	Chr3:86760907-86762044 (+)
DBA/2J	ENSMUSG00185053477	lncRNA gene	Chr3:86870732-86871869 (+)
FVB/NJ	ENSMUSG00205050030	lncRNA gene	Chr3:85684898-85686035 (+)
JF1/MsJ	ENSUMUG00000052515	lncRNA gene	Chr3:86484573-86485707 (+)
LP/J	ENSMUSG00230036516	lncRNA gene	Chr3:88896798-88897935 (+)
NOD/ShiLtJ	ENSMUSG00190051106	lncRNA gene	Chr3:87149334-87150471 (+)
NZO/HlLtJ	ENSMUSG00225012375	lncRNA gene	Chr3:91654828-91655965 (+)
PWK/PhJ	ENSLUMG00010052909	lncRNA gene	Chr3:86516419-86517553 (+)
SPRET/EiJ	ENSMSPG00010051044	lncRNA gene	Chr3:87390868-87392007 (+)
WSB/EiJ	ENSIUOG00005050462	lncRNA gene	Chr3:87176116-87177253 (+)

Homology

• Gene Tree
  Gm42809
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105941 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105941	Ensembl Gene Model | MGI Sequence Detail	1138	C57BL/6J
transcript	ENSMUST00000198429	Ensembl | MGI Sequence Detail	1138	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30143	Chr3:89818700-89818713 (+)	-1,516 bp
Tssr30144	Chr3:89820199-89820205 (+)	-21 bp