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Gm42794 Gene Detail
Summary
  • Symbol
    Gm42794
  • Name
    predicted gene 42794
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5662931
  • Alliance
    genome feature page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:87903460-87998719 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    2769 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662931
 lncRNA gene Chr5:87903460-87998719 (-)
129S1/SvImJ ENSMUSG00200009538
 lncRNA gene Chr5:83719081-83722610 (-)
A/J ENSMUSG00195025956
 lncRNA gene Chr5:82889317-82892846 (-)
AKR/J ENSMUSG00220012117
 lncRNA gene Chr5:83029407-83032936 (-)
BALB/cJ ENSMUSG00180028277
 lncRNA gene Chr5:82722109-82725636 (-)
C3H/HeJ ENSMUSG00175045672
 lncRNA gene Chr5:84797274-84800802 (-)
C57BL/6NJ ENSMUSG00215036325
 lncRNA gene Chr5:83582355-83585884 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003701
 antisense lncRNA gene Chr5:80795560-80799316 (-)
CAST/EiJ ENSTCUG00005038365
 lncRNA gene Chr5:82428052-82431624 (-)
CBA/J ENSMUSG00210006166
 lncRNA gene Chr5:83612567-83616094 (-)
DBA/2J ENSMUSG00185041614
 lncRNA gene Chr5:85531772-85535299 (-)
FVB/NJ ENSMUSG00205033759
 lncRNA gene Chr5:82435879-82439411 (-)
JF1/MsJ ENSUMUG00000001121
 lncRNA gene Chr5:89987440-89990961 (-)
LP/J ENSMUSG00230001822
 lncRNA gene Chr5:90249082-90252611 (-)
NOD/ShiLtJ ENSMUSG00190042895
 lncRNA gene Chr5:82473850-82477377 (-)
NZO/HlLtJ ENSMUSG00225010050
 lncRNA gene Chr5:95278068-95281597 (-)
PWK/PhJ ENSLUMG00010030255
 lncRNA gene Chr5:82497308-82500822 (-)
SPRET/EiJ ENSMSPG00010035980
 lncRNA gene Chr5:84782604-84786146 (-)
WSB/EiJ ENSIUOG00005029664
 lncRNA gene Chr5:85431429-85434963 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    30
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104839 Ensembl Gene Model | MGI Sequence Detail 95260 C57BL/6J ±  kb
transcript ENSMUST00000250821 Ensembl | MGI Sequence Detail 1662 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 3
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory