Gm42744 Gene Detail

Summary

• Symbol
  Gm42744
• Name
  predicted gene 42744
• Synonyms
  Gm30103

• Feature Type
  lncRNA gene
• IDs
  MGI:5662881
  NCBI Gene: 102631881
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:4834753-4849094 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  608 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662881	lncRNA gene	Chr5:4834753-4849094 (-)
129S1/SvImJ	ENSMUSG00200003095	lncRNA gene	Chr5:1481504-1495895 (-)
A/J	ENSMUSG00195012755	lncRNA gene	Chr5:1513456-1527798 (-)
AKR/J	ENSMUSG00220002145	lncRNA gene	Chr5:1432798-1447139 (-)
BALB/cJ	ENSMUSG00180017888	lncRNA gene	Chr5:1300219-1314610 (-)
C3H/HeJ	ENSMUSG00175030281	lncRNA gene	Chr5:1450269-1464611 (-)
C57BL/6NJ	ENSMUSG00215026151	lncRNA gene	Chr5:1745833-1760174 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005979	lincRNA gene	Chr5:1697118-1709459 (-)
CAST/EiJ	ENSTCUG00005001938	lncRNA gene	Chr5:1649922-1664398 (-)
CBA/J	ENSMUSG00210002789	lncRNA gene	Chr5:1814800-1829142 (-)
DBA/2J	ENSMUSG00185029409	lncRNA gene	Chr5:1818585-1832927 (-)
FVB/NJ	ENSMUSG00205008356	lncRNA gene	Chr5:1526841-1541177 (-)
JF1/MsJ	ENSUMUG00000004893	lncRNA gene	Chr5:1820075-1834387 (-)
LP/J	ENSMUSG00230003457	lncRNA gene	Chr5:5732032-5746423 (-)
NOD/ShiLtJ	ENSMUSG00190013962	lncRNA gene	Chr5:1434507-1448818 (-)
NZO/HlLtJ	ENSMUSG00225006634	lncRNA gene	Chr5:9512649-9526990 (-)
PWK/PhJ	ENSLUMG00010020494	lncRNA gene	Chr5:1782842-1797554 (-)
SPRET/EiJ	ENSMSPG00010005402	lncRNA gene	Chr5:1643580-1655764 (-)
WSB/EiJ	ENSIUOG00005026904	lncRNA gene	Chr5:1513817-1528150 (-)

Homology

• Gene Tree
  Gm42744
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000105560 (Evidence)
• NCBI Gene
  102631881

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105560	Ensembl Gene Model | MGI Sequence Detail	14342	C57BL/6J
transcript	ENSMUST00000196517	Ensembl | MGI Sequence Detail	2147	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5589262

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42744:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50016	Chr5:4849092-4849097 (-)	-1 bp