Gm42716 Gene Detail

Summary

• Symbol
  Gm42716
• Name
  predicted gene 42716

• Feature Type
  lncRNA gene
• IDs
  MGI:5662853
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:44225540-44248196 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  899 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662853	lncRNA gene	Chr5:44225540-44248196 (-)
129S1/SvImJ	ENSMUSG00200033574	lncRNA gene	Chr5:39717044-39739706 (-)
A/J	ENSMUSG00195029640	lncRNA gene	Chr5:39122425-39145088 (-)
AKR/J	ENSMUSG00220002454	lncRNA gene	Chr5:39159147-39181815 (-)
BALB/cJ	ENSMUSG00180024280	lncRNA gene	Chr5:38949808-38972447 (-)
C3H/HeJ	ENSMUSG00175015290	lncRNA gene	Chr5:40918060-40940728 (-)
C57BL/6NJ	ENSMUSG00215006155	lncRNA gene	Chr5:39676837-39699498 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013723	unclassified non-coding RNA gene	Chr5:38461839-38483244 (-)
CAST/EiJ	ENSTCUG00005025422	lncRNA gene	Chr5:39054002-39077097 (-)
CBA/J	ENSMUSG00210005522	lncRNA gene	Chr5:39883190-39905847 (-)
DBA/2J	ENSMUSG00185001790	lncRNA gene	Chr5:41761292-41783954 (-)
FVB/NJ	ENSMUSG00205022219	lncRNA gene	Chr5:38671226-38693893 (-)
JF1/MsJ	ENSUMUG00000003165	lncRNA gene	Chr5:46332798-46355487 (-)
LP/J	ENSMUSG00230002653	lncRNA gene	Chr5:46416960-46439619 (-)
NOD/ShiLtJ	ENSMUSG00190003492	lncRNA gene	Chr5:38957962-38980622 (-)
NZO/HlLtJ	ENSMUSG00225028599	lncRNA gene	Chr5:51572834-51595460 (-)
PWK/PhJ	ENSLUMG00010023323	lncRNA gene	Chr5:39000981-39023726 (-)
SPRET/EiJ	ENSMSPG00010039650	lncRNA gene	Chr5:40278464-40301059 (-)
WSB/EiJ	ENSIUOG00005019356	lncRNA gene	Chr5:41839532-41862197 (-)

Homology

• Gene Tree
  Gm42716
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000105264 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105264	Ensembl Gene Model | MGI Sequence Detail	22657	C57BL/6J
transcript	ENSMUST00000196555	Ensembl | MGI Sequence Detail	1813	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42716:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50879	Chr5:44246883-44246898 (-)	1,305 bp
Tssr1474	Chr5:44231129-44231140 (-)	17,061 bp
Tssr50878	Chr5:44231103-44231126 (-)	17,081 bp