Gm42646 Gene Detail

Summary

• Symbol
  Gm42646
• Name
  predicted gene 42646

• Feature Type
  unclassified gene
• IDs
  MGI:5662783
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:66014661-66015574 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662783	unclassified gene	Chr5:66014661-66015574 (+)
129S1/SvImJ	ENSMUSG00200035965	unclassified gene	Chr5:61632898-61633811 (+)
A/J	ENSMUSG00195034544	unclassified gene	Chr5:61010226-61011139 (+)
AKR/J	ENSMUSG00220004479	unclassified gene	Chr5:61144442-61145355 (+)
BALB/cJ	ENSMUSG00180006193	unclassified gene	Chr5:60796012-60796925 (+)
C3H/HeJ	ENSMUSG00175028417	unclassified gene	Chr5:62830030-62830943 (+)
C57BL/6NJ	ENSMUSG00215006209	unclassified gene	Chr5:61561780-61562693 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001360	unclassified gene	Chr5:59157491-59158438 (+)
CAST/EiJ	ENSTCUG00005031623	unclassified gene	Chr5:60711126-60712039 (+)
CBA/J	ENSMUSG00210023851	unclassified gene	Chr5:61742974-61743887 (+)
DBA/2J	ENSMUSG00185005645	unclassified gene	Chr5:63600463-63601376 (+)
FVB/NJ	ENSMUSG00205011620	unclassified gene	Chr5:60545159-60546072 (+)
JF1/MsJ	ENSUMUG00000020944	unclassified gene	Chr5:68071178-68072091 (+)
LP/J	ENSMUSG00230009419	unclassified gene	Chr5:68245615-68246528 (+)
NOD/ShiLtJ	ENSMUSG00190000539	unclassified gene	Chr5:60735226-60736139 (+)
NZO/HlLtJ	ENSMUSG00225010858	unclassified gene	Chr5:73371415-73372328 (+)
PWK/PhJ	ENSLUMG00010015077	unclassified gene	Chr5:60678430-60679340 (+)
SPRET/EiJ	ENSMSPG00010037894	unclassified gene	Chr5:62489097-62490070 (+)
WSB/EiJ	ENSIUOG00005018870	unclassified gene	Chr5:63688124-63689037 (+)

Homology

• Gene Tree
  Gm42646
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106776 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106776	Ensembl Gene Model | MGI Sequence Detail	914	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46492	Chr5:66015502-66015517 (+)	849 bp
Tssr46493	Chr5:66015519-66015526 (+)	862 bp