Gm42621 Pseudogene Detail

Summary

• Symbol
  Gm42621
• Name
  predicted gene 42621

• Feature Type
  pseudogene
• IDs
  MGI:5662758
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:88344847-88349266 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662758	pseudogene	Chr5:88344847-88349266 (+)
129S1/SvImJ	ENSMUSG00200010281	pseudogene	Chr5:84083059-84087481 (+)
A/J	ENSMUSG00195026702	pseudogene	Chr5:83246482-83250902 (+)
AKR/J	ENSMUSG00220012057	pseudogene	Chr5:83386890-83391309 (+)
BALB/cJ	ENSMUSG00180026909	pseudogene	Chr5:83086069-83090490 (+)
C3H/HeJ	ENSMUSG00175044630	pseudogene	Chr5:85161690-85166111 (+)
C57BL/6NJ	ENSMUSG00215035540	pseudogene	Chr5:83939540-83943959 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038475	pseudogene	Chr5:82793231-82797774 (+)
CBA/J	ENSMUSG00210006575	pseudogene	Chr5:83976505-83980926 (+)
DBA/2J	ENSMUSG00185041987	pseudogene	Chr5:85895731-85900152 (+)
FVB/NJ	ENSMUSG00205033934	pseudogene	Chr5:82784031-82788450 (+)
JF1/MsJ	ENSUMUG00000001027	pseudogene	Chr5:90246384-90248746 (+)
LP/J	ENSMUSG00230001656	pseudogene	Chr5:90613032-90617453 (+)
NOD/ShiLtJ	ENSMUSG00190040397	pseudogene	Chr5:82843448-82847869 (+)
NZO/HlLtJ	ENSMUSG00225009713	pseudogene	Chr5:95637679-95642098 (+)
PWK/PhJ	ENSLUMG00010029855	pseudogene	Chr5:82880938-82885476 (+)
SPRET/EiJ	ENSMSPG00010038938	pseudogene	Chr5:85259943-85264478 (+)
SPRET/EiJ	ENSMSPG00010038427	pseudogene	Chr5:85190140-85194620 (+)
WSB/EiJ	ENSIUOG00005029423	pseudogene	Chr5:85800846-85805270 (+)

Homology

• Gene Tree
  Gm42621
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm42621
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106065 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106065	Ensembl Gene Model | MGI Sequence Detail	4420	C57BL/6J
transcript	ENSMUST00000198114	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm42621:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46973	Chr5:88344845-88344852 (+)	2 bp