Gm42596 Gene Detail

Summary

• Symbol
  Gm42596
• Name
  predicted gene 42596

• Feature Type
  lncRNA gene
• IDs
  MGI:5662733
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:110595855-110597815 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662733	lncRNA gene	Chr5:110595855-110597815 (+)
129S1/SvImJ	ENSMUSG00200023433	lncRNA gene	Chr5:104360646-104362603 (+)
A/J	ENSMUSG00195040081	lncRNA gene	Chr5:103842832-103844789 (+)
AKR/J	ENSMUSG00220052308	lncRNA gene	Chr5:103373029-103374986 (+)
BALB/cJ	ENSMUSG00180048361	lncRNA gene	Chr5:103994582-103996539 (+)
C3H/HeJ	ENSMUSG00175047644	lncRNA gene	Chr5:105979917-105981874 (+)
C57BL/6NJ	ENSMUSG00215037575	lncRNA gene	Chr5:103993279-103995236 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003730	antisense lncRNA gene	Chr5:103359663-103361635 (+)
CAST/EiJ	ENSTCUG00005034676	lncRNA gene	Chr5:103176092-103178049 (+)
CBA/J	ENSMUSG00210046191	lncRNA gene	Chr5:104732068-104734025 (+)
DBA/2J	ENSMUSG00185049919	lncRNA gene	Chr5:107759782-107761739 (+)
FVB/NJ	ENSMUSG00205053362	lncRNA gene	Chr5:103631901-103633858 (+)
JF1/MsJ	ENSUMUG00000017739	lncRNA gene	Chr5:110607603-110609536 (+)
LP/J	ENSMUSG00230049863	lncRNA gene	Chr5:111899113-111901070 (+)
NOD/ShiLtJ	ENSMUSG00190048688	lncRNA gene	Chr5:103668477-103670434 (+)
NZO/HlLtJ	ENSMUSG00225026062	lncRNA gene	Chr5:119520972-119522929 (+)
PWK/PhJ	ENSLUMG00010039148	lncRNA gene	Chr5:102520951-102522884 (+)
SPRET/EiJ	ENSMSPG00010047802	lncRNA gene	Chr5:105766606-105768563 (+)
WSB/EiJ	ENSIUOG00005045762	lncRNA gene	Chr5:106371778-106373735 (+)

Homology

• Gene Tree
  Gm42596
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105482 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105482	Ensembl Gene Model | MGI Sequence Detail	1961	C57BL/6J
transcript	ENSMUST00000196305	Ensembl | MGI Sequence Detail	1961	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42596:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1585	Chr5:110594778-110594779 (+)	-1,076 bp
Tssr1586	Chr5:110595833-110595835 (+)	-21 bp
Tssr47895	Chr5:110596207-110596223 (+)	360 bp