Gm42511 Pseudogene Detail

Summary

• Symbol
  Gm42511
• Name
  predicted gene 42511

• Feature Type
  pseudogene
• IDs
  MGI:5662648
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:57850339-57850572 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662648	pseudogene	Chr3:57850339-57850572 (+)
129S1/SvImJ	ENSMUSG00200023643	pseudogene	Chr3:54721536-54721769 (+)
A/J	ENSMUSG00195032898	pseudogene	Chr3:54630383-54630616 (+)
AKR/J	ENSMUSG00220030352	pseudogene	Chr3:54691383-54691616 (+)
BALB/cJ	ENSMUSG00180025957	pseudogene	Chr3:54718045-54718278 (+)
C3H/HeJ	ENSMUSG00175008762	pseudogene	Chr3:54559437-54559670 (+)
C57BL/6NJ	ENSMUSG00215009434	pseudogene	Chr3:55003509-55003742 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010863	pseudogene	Chr3:51374228-51374476 (+)
CAST/EiJ	ENSTCUG00005002521	pseudogene	Chr3:54326125-54326358 (+)
CBA/J	ENSMUSG00210004140	pseudogene	Chr3:54675170-54675403 (+)
DBA/2J	ENSMUSG00185028094	pseudogene	Chr3:54844432-54844665 (+)
FVB/NJ	ENSMUSG00205003956	pseudogene	Chr3:53831385-53831618 (+)
JF1/MsJ	ENSUMUG00000003513	pseudogene	Chr3:54250984-54251217 (+)
LP/J	ENSMUSG00230004810	pseudogene	Chr3:56858265-56858498 (+)
NOD/ShiLtJ	ENSMUSG00190032214	pseudogene	Chr3:55036227-55036460 (+)
NZO/HlLtJ	ENSMUSG00225018967	pseudogene	Chr3:59470737-59470970 (+)
PWK/PhJ	ENSLUMG00010005331	pseudogene	Chr3:54359714-54359947 (+)
SPRET/EiJ	ENSMSPG00010007537	pseudogene	Chr3:55208297-55208536 (+)
WSB/EiJ	ENSIUOG00005009162	pseudogene	Chr3:54806094-54806327 (+)

Homology

• Gene Tree
  Gm42511
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm42511
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104730	Ensembl Gene Model | MGI Sequence Detail	234	C57BL/6J
transcript	ENSMUST00000196160	Ensembl | MGI Sequence Detail	234	Not Applicable

References

• Summaries
  All 5

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm42511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29193	Chr3:57850309-57850320 (+)	-24 bp