Gm42493 Gene Detail

Summary

• Symbol
  Gm42493
• Name
  predicted gene 42493

• Feature Type
  lncRNA gene
• IDs
  MGI:5662630
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:109277713-109289173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662630	lncRNA gene	Chr9:109277713-109289173 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004697	antisense lncRNA gene	Chr9:111441819-111465233 (+)
A/J	MGP_AJ_G0004677	antisense lncRNA gene	Chr9:107130843-107404188 (+)
AKR/J	MGP_AKRJ_G0004660	antisense lncRNA gene	Chr9:110049921-110063496 (+)
BALB/cJ	MGP_BALBcJ_G0004661	antisense lncRNA gene	Chr9:106818883-107120738 (+)
C3H/HeJ	MGP_C3HHeJ_G0004610	antisense lncRNA gene	Chr9:110500707-110516915 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004811	antisense lncRNA gene	Chr9:114483908-114497293 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004566	antisense lncRNA gene	Chr9:110323810-110331698 (+)
CBA/J	MGP_CBAJ_G0004604	antisense lncRNA gene	Chr9:118593857-118618339 (+)
DBA/2J	MGP_DBA2J_G0004619	antisense lncRNA gene	Chr9:106838839-106851251 (+)
FVB/NJ	MGP_FVBNJ_G0004637	antisense lncRNA gene	Chr9:105677250-105691576 (+)
LP/J	MGP_LPJ_G0004701	antisense lncRNA gene	Chr9:111695931-111717022 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004624	antisense lncRNA gene	Chr9:120131094-120143452 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004810	antisense lncRNA gene	Chr9:110383586-110396810 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004609	antisense lncRNA gene	Chr9:110216744-110224450 (+)

Homology

• Gene Tree
  Gm42493
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000106134 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106134	Ensembl Gene Model | MGI Sequence Detail	11461	C57BL/6J
transcript	ENSMUST00000197559	Ensembl | MGI Sequence Detail	1121	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;