Gm42435 Gene Detail

Summary

• Symbol
  Gm42435
• Name
  predicted gene 42435

• Feature Type
  lncRNA gene
• IDs
  MGI:5662572
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:3548625-3550072 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662572	lncRNA gene	Chr5:3548625-3550072 (-)
129S1/SvImJ	ENSMUSG00200003206	lncRNA gene	Chr5:145018-146465 (-)
A/J	ENSMUSG00195012875	lncRNA gene	Chr5:213438-214885 (-)
AKR/J	ENSMUSG00220002356	lncRNA gene	Chr5:145070-146517 (-)
BALB/cJ	ENSMUSG00180051255	lncRNA gene	Chr19:143773-145220 (-)
C3H/HeJ	ENSMUSG00175029930	lncRNA gene	Chr5:150273-151720 (-)
C57BL/6NJ	ENSMUSG00215023123	lncRNA gene	Chr5:454314-455761 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003623	antisense lncRNA gene	Chr5:226742-228176 (-)
CAST/EiJ	ENSTCUG00005001851	lncRNA gene	Chr5:362695-364166 (-)
CBA/J	ENSMUSG00210002781	lncRNA gene	Chr5:514977-516424 (-)
DBA/2J	ENSMUSG00185029516	lncRNA gene	Chr5:518606-520053 (-)
FVB/NJ	ENSMUSG00205008108	lncRNA gene	Chr5:210816-212263 (-)
JF1/MsJ	ENSUMUG00000003585	lncRNA gene	Chr5:531640-533110 (-)
LP/J	ENSMUSG00230003425	lncRNA gene	Chr5:4389572-4391019 (-)
NOD/ShiLtJ	ENSMUSG00190012981	lncRNA gene	Chr5:146183-147653 (-)
NZO/HlLtJ	ENSMUSG00225006670	lncRNA gene	Chr5:8225110-8226557 (-)
PWK/PhJ	ENSLUMG00010020350	lncRNA gene	Chr5:495799-497276 (-)
SPRET/EiJ	ENSMSPG00010005031	lncRNA gene	Chr5:334854-336308 (-)
WSB/EiJ	ENSIUOG00005027115	lncRNA gene	Chr5:208065-209512 (-)

Homology

• Gene Tree
  Gm42435
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105534 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105534	Ensembl Gene Model | MGI Sequence Detail	1448	C57BL/6J
transcript	ENSMUST00000196630	Ensembl | MGI Sequence Detail	1448	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm42435:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1412	Chr5:3551699-3551710 (-)	-1,633 bp
Tssr49986	Chr5:3551654-3551664 (-)	-1,587 bp