Gm42424 Pseudogene Detail

Summary

• Symbol
  Gm42424
• Name
  predicted gene 42424

• Feature Type
  pseudogene
• IDs
  MGI:5662561
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:139687402-139687777 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662561	pseudogene	Chr5:139687402-139687777 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013295	pseudogene	Chr5:144708148-144708523 (+)
A/J	MGP_AJ_G0013274	pseudogene	Chr5:138568198-138568573 (+)
AKR/J	MGP_AKRJ_G0013239	pseudogene	Chr5:142888051-142888426 (+)
BALB/cJ	MGP_BALBcJ_G0013253	pseudogene	Chr5:139810800-139811175 (+)
C3H/HeJ	MGP_C3HHeJ_G0013103	pseudogene	Chr5:143666182-143666557 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013622	pseudogene	Chr5:150050425-150050800 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011766	pseudogene	Chr5:132422128-132422512 (+)
CAST/EiJ	MGP_CASTEiJ_G0012824	pseudogene	Chr5:143079897-143080272 (+)
CBA/J	MGP_CBAJ_G0013071	pseudogene	Chr5:156256879-156257254 (+)
DBA/2J	MGP_DBA2J_G0013154	pseudogene	Chr5:138372149-138372524 (+)
FVB/NJ	MGP_FVBNJ_G0013153	pseudogene	Chr5:137499682-137500057 (+)
LP/J	MGP_LPJ_G0013222	pseudogene	Chr5:145329592-145329967 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013170	pseudogene	Chr5:158871823-158872198 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013624	pseudogene	Chr5:142726597-142726972 (+)
PWK/PhJ	MGP_PWKPhJ_G0012637	pseudogene	Chr5:137394104-137394483 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012427	pseudogene	Chr5:140395556-140395936 (+)
WSB/EiJ	MGP_WSBEiJ_G0012862	pseudogene	Chr5:143481132-143481507 (+)

Homology

• Gene Tree
  Gm42424
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104637 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104637	Ensembl Gene Model | MGI Sequence Detail	376	C57BL/6J
transcript	ENSMUST00000198319	Ensembl | MGI Sequence Detail	376	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;