Cdr1os Gene Detail

Summary

• Symbol
  Cdr1os
• Name
  cerebellar degeneration related antigen 1, opposite strand
• Synonyms
  C230004F18Rik, Cdr1as

• Feature Type
  lncRNA gene
• IDs
  MGI:5637821
  NCBI Gene: 331424
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:60159984-60247391 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1631 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5637821	lncRNA gene	ChrX:60159705-60247391 (+)
129S1/SvImJ	ENSMUSG00200016021	lncRNA gene	ChrX:42413278-42500685 (+)
A/J	ENSMUSG00195009442	lncRNA gene	ChrX:45939553-46026956 (+)
AKR/J	ENSMUSG00220024558	lncRNA gene	ChrX:41491452-41578851 (+)
BALB/cJ	ENSMUSG00180007030	lncRNA gene	ChrX:42560226-42647648 (+)
C3H/HeJ	ENSMUSG00175009243	lncRNA gene	ChrX:46124240-46211655 (+)
C57BL/6NJ	ENSMUSG00215007934	lncRNA gene	ChrX:42719115-42806520 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013897	unclassified non-coding RNA gene	ChrX:56507537-56568072 (+)
CAST/EiJ	ENSTCUG00005019661	lncRNA gene	ChrX:44324858-44413552 (+)
CBA/J	ENSMUSG00210018724	lncRNA gene	ChrX:42919570-43006987 (+)
DBA/2J	ENSMUSG00185036231	lncRNA gene	ChrX:55205442-55292845 (+)
FVB/NJ	ENSMUSG00205009199	lncRNA gene	ChrX:42538073-42625480 (+)
JF1/MsJ	ENSUMUG00000027967	lncRNA gene	ChrX:76145234-76232934 (+)
LP/J	ENSMUSG00230019819	lncRNA gene	ChrX:61762325-61849727 (+)
NOD/ShiLtJ	ENSMUSG00190013680	lncRNA gene	ChrX:42222975-42310391 (+)
NZO/HlLtJ	ENSMUSG00225032498	lncRNA gene	ChrX:67007805-67095208 (+)
PWK/PhJ	ENSLUMG00010026921	lncRNA gene	ChrX:42080220-42167725 (+)
SPRET/EiJ	ENSMSPG00010004629	lncRNA gene	ChrX:44812101-44900339 (+)
WSB/EiJ	ENSIUOG00005012112	lncRNA gene	ChrX:43256606-43344002 (+)

Homology

• Gene Tree
  Cdr1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotypes from 3 alleles in 3 genetic backgrounds
  7 phenotype references
  

• All Mutations and Alleles
  6
• Endonuclease-mediated
  6
• Find Mice (IMSR)
  3 strains or lines available

Mice hemyzygous or homozygous for a knock-out allele are born in expected Mendelian frequency.

Expression

• Assay Results
  750
• Tissues
  36
• cDNA Data
  3
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  7
• UniProt
  1

• Ensembl
  ENSMUSG00000071753 (Evidence)
• NCBI Gene
  331424

Representative Sequences			Length	Strain/Species
genomic	331424	NCBI Gene Model | MGI Sequence Detail	87408	C57BL/6J
transcript	NR_173101	RefSeq | MGI Sequence Detail	5534	C57BL/6
polypeptide	Q8C4I6	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  Genomic 2

  cDNA 3

  Primer pair 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3041217

References

• Summaries
  All 24

  Developmental Gene Expression 3

  Phenotypes 7
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:350755 Scoyni F, et al., ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling. Cell Rep. 2024 Mar 5;43(3):113862