Gm42397 Gene Detail

Summary

• Symbol
  Gm42397
• Name
  predicted gene, 42397
• Synonyms
  Gm44810

• Feature Type
  lncRNA gene
• IDs
  MGI:5625282
  NCBI Gene: 105247269
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:70607668-70624778 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  585 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625282	lncRNA gene	Chr7:70519096-70788083 (+)
129S1/SvImJ	ENSMUSG00200013410	lncRNA gene	Chr7:57266662-57472022 (+)
A/J	ENSMUSG00195015712	lncRNA gene	Chr7:61669155-61874544 (+)
AKR/J	ENSMUSG00220021321	lncRNA gene	Chr7:55182459-55387860 (+)
BALB/cJ	ENSMUSG00180005021	lncRNA gene	Chr7:58379023-58584413 (+)
C3H/HeJ	ENSMUSG00175011517	lncRNA gene	Chr7:59171234-59376596 (+)
C57BL/6NJ	ENSMUSG00215023738	lncRNA gene	Chr7:58298380-58500841 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004499	lncRNA gene	Chr7:61846144-62052687 (+)
CBA/J	ENSMUSG00210020072	lncRNA gene	Chr7:59031260-59236625 (+)
DBA/2J	ENSMUSG00185001083	lncRNA gene	Chr7:63351535-63567206 (+)
FVB/NJ	ENSMUSG00205005089	lncRNA gene	Chr7:59014550-59224672 (+)
JF1/MsJ	ENSUMUG00000011198	lncRNA gene	Chr7:68117601-68332380 (+)
LP/J	ENSMUSG00230022323	lncRNA gene	Chr7:69440748-69656415 (+)
NOD/ShiLtJ	ENSMUSG00190007601	lncRNA gene	Chr7:59137023-59342389 (+)
NZO/HlLtJ	ENSMUSG00225017863	lncRNA gene	Chr7:67717851-67932658 (+)
PWK/PhJ	ENSLUMG00010019923	lncRNA gene	Chr7:57634177-57849124 (+)
SPRET/EiJ	ENSMSPG00010003883	lncRNA gene	Chr7:57973766-58196835 (+)
WSB/EiJ	ENSIUOG00005004949	lncRNA gene	Chr7:59530032-59732706 (+)

Homology

• Gene Tree
  Gm42397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42397
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  1

• Ensembl
  ENSMUSG00000109532 (Evidence)
• NCBI Gene
  105247269

Representative Sequences			Length	Strain/Species
genomic	105247269	NCBI Gene Model | MGI Sequence Detail	17111	C57BL/6J
transcript	XR_882209	RefSeq | MGI Sequence Detail	429	C57BL/6J

Other
Accession IDs

MGI:5753386

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55