Pnma8c Gene Detail

Summary

• Symbol
  Pnma8c
• Name
  PNMA family member 8C
• Synonyms
  Gm42372

• Feature Type
  protein coding gene
• IDs
  MGI:5625257
  NCBI Gene: 105247240
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr7:16717008-16722071 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625257	protein coding gene	Chr7:16717008-16722077 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040544	pseudogene	Chr7:14759298-14759658 (+)
A/J	MGP_AJ_G0040531	pseudogene	Chr7:14464424-14464784 (+)
AKR/J	MGP_AKRJ_G0040457	pseudogene	Chr7:14808460-14808820 (+)
BALB/cJ	MGP_BALBcJ_G0040526	pseudogene	Chr7:14575544-14575904 (+)
C3H/HeJ	MGP_C3HHeJ_G0040159	pseudogene	Chr7:14996756-14997116 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041170	pseudogene	Chr7:15482475-15482835 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037424	pseudogene	Chr7:16007202-16007562 (+)
CAST/EiJ	MGP_CASTEiJ_G0039215	pseudogene	Chr7:11775452-11775812 (+)
CBA/J	MGP_CBAJ_G0040127	pseudogene	Chr7:16011596-16011956 (+)
DBA/2J	MGP_DBA2J_G0040330	pseudogene	Chr7:14361825-14362185 (+)
FVB/NJ	MGP_FVBNJ_G0040275	pseudogene	Chr7:14260184-14260544 (+)
LP/J	MGP_LPJ_G0040368	pseudogene	Chr7:14998136-14998496 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040267	pseudogene	Chr7:15927847-15928207 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041238	pseudogene	Chr7:14591751-14592111 (+)
PWK/PhJ	MGP_PWKPhJ_G0038892	pseudogene	Chr7:11880349-11880709 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038594	pseudogene	Chr7:9522231-9522591 (+)
WSB/EiJ	MGP_WSBEiJ_G0039459	pseudogene	Chr7:14658201-14658561 (+)

Homology

• Human Ortholog
  PNMA8C, PNMA family member 8C

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PNMA8C, PNMA family member 8C
  
• Links
  HGNC:53427

  NCBI Gene ID: 110806277

  UniProt: A0A1B0GUJ8

  
  
• Chr Location
  19q13.32; chr19:46424697-46428936 (-)  GRCh38

---

• MGI Vertebrate Homology
  Pnma8c stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: PNMA8C
• Gene Tree
  Pnma8c
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS90166.1

• Ensembl
  ENSMUSG00000108348 (Evidence)
• NCBI Gene
  105247240

Representative Sequences			Length	Strain/Species
genomic	105247240	NCBI Gene Model | MGI Sequence Detail	5064	C57BL/6J
transcript	NM_001370851	RefSeq | MGI Sequence Detail	5064	ZRU/MplStud
polypeptide	NP_001357780	RefSeq | MGI Sequence Detail	204	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR026523 Paraneoplastic antigen Ma
  IPR048271 Paraneoplastic antigen Ma-like, N-terminal domain

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Pnma8c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64666	Chr7:16716990-16717075 (+)	25 bp
Tssr64667	Chr7:16717098-16717108 (+)	95 bp
Tssr64668	Chr7:16720839-16720862 (+)	3,843 bp
Tssr64669	Chr7:16720885-16720913 (+)	3,891 bp
Tssr64670	Chr7:16720949-16720988 (+)	3,961 bp
Tssr64671	Chr7:16721122-16721142 (+)	4,124 bp