Gm42303 Gene Detail

Summary

• Symbol
  Gm42303
• Name
  predicted gene, 42303
• Synonyms
  Gm45260

• Feature Type
  lncRNA gene
• IDs
  MGI:5625188
  NCBI Gene: 105247151
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:76369129-76408349 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1077 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625188	lncRNA gene	Chr4:76369124-76408926 (+)
129S1/SvImJ	ENSMUSG00200000671	lncRNA gene	Chr4:71305935-71345878 (+)
A/J	ENSMUSG00195006252	lncRNA gene	Chr4:71846995-71886958 (+)
AKR/J	ENSMUSG00220018868	lncRNA gene	Chr4:71269907-71309726 (+)
BALB/cJ	ENSMUSG00180000874	lncRNA gene	Chr4:70806125-70846054 (+)
C3H/HeJ	ENSMUSG00175006758	lncRNA gene	Chr4:71773707-71813516 (+)
C57BL/6NJ	ENSMUSG00215002369	lncRNA gene	Chr4:71724973-71764778 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014853	lncRNA gene	Chr4:71353806-71393721 (+)
CBA/J	ENSMUSG00210000713	lncRNA gene	Chr4:71357583-71397393 (+)
DBA/2J	ENSMUSG00185015945	lncRNA gene	Chr4:71899833-71939787 (+)
FVB/NJ	ENSMUSG00205001095	lncRNA gene	Chr4:70111574-70151390 (+)
JF1/MsJ	ENSUMUG00000032609	lncRNA gene	Chr4:72423965-72463923 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190009284	lncRNA gene	Chr4:70777647-70817482 (+)
NZO/HlLtJ	ENSMUSG00225028088	lncRNA gene	Chr4:80409613-80449426 (+)
PWK/PhJ	ENSLUMG00010010384	lncRNA gene	Chr4:70172590-70212433 (+)
SPRET/EiJ	ENSMSPG00010005182	lncRNA gene	Chr4:71630990-71670834 (+)
WSB/EiJ	ENSIUOG00005000382	lncRNA gene	Chr4:71158529-71198357 (+)

Homology

• Gene Tree
  Gm42303
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm42303
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000110373 (Evidence)
• NCBI Gene
  105247151

Representative Sequences			Length	Strain/Species
genomic	105247151	NCBI Gene Model | MGI Sequence Detail	39221	C57BL/6J
transcript	NR_168523	RefSeq | MGI Sequence Detail	1508	ZRU/MplStud

Other
Accession IDs

MGI:5791096

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42303:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37647	Chr4:76369121-76369148 (+)	6 bp
Tssr37648	Chr4:76369690-76369700 (+)	566 bp