Gm42196 Gene Detail

Summary

• Symbol
  Gm42196
• Name
  predicted gene, 42196
• Synonyms
  Gm45681

• Feature Type
  lncRNA gene
• IDs
  MGI:5625081
  NCBI Gene: 105247012
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:28230571-28265526 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  913 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625081	lncRNA gene	Chr3:28230571-28266426 (+)
129S1/SvImJ	ENSMUSG00200024731	lncRNA gene	Chr3:24950690-24986344 (+)
A/J	ENSMUSG00195022159	lncRNA gene	Chr3:25073244-25105840 (+)
AKR/J	ENSMUSG00220008778	lncRNA gene	Chr3:25077686-25113339 (+)
BALB/cJ	ENSMUSG00180035096	lncRNA gene	Chr3:25068382-25104042 (+)
C3H/HeJ	ENSMUSG00175028896	lncRNA gene	Chr3:25064202-25096788 (+)
C57BL/6NJ	ENSMUSG00215018839	lncRNA gene	Chr3:25327419-25363083 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025983	lncRNA gene	Chr3:24920377-24952947 (+)
CBA/J	ENSMUSG00210037793	lncRNA gene	Chr3:25050062-25082652 (+)
DBA/2J	ENSMUSG00185009742	lncRNA gene	Chr3:25296070-25328629 (+)
FVB/NJ	ENSMUSG00205009186	lncRNA gene	Chr3:24618016-24650579 (+)
JF1/MsJ	ENSUMUG00000005433	lncRNA gene	Chr3:24779676-24813396 (+)
LP/J	ENSMUSG00230002240	lncRNA gene	Chr3:27180157-27215818 (+)
NOD/ShiLtJ	ENSMUSG00190036436	lncRNA gene	Chr3:25354706-25387273 (+)
NZO/HlLtJ	ENSMUSG00225007475	lncRNA gene	Chr3:29814683-29850344 (+)
PWK/PhJ	ENSLUMG00010038218	lncRNA gene	Chr3:24773158-24806032 (+)
SPRET/EiJ	ENSMSPG00010024592	lncRNA gene	Chr3:25160622-25193283 (+)
WSB/EiJ	ENSIUOG00005036250	lncRNA gene	Chr3:25331745-25364325 (+)

Homology

• Gene Tree
  Gm42196
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000109716 (Evidence)
• NCBI Gene
  105247012

Representative Sequences			Length	Strain/Species
genomic	105247012	NCBI Gene Model | MGI Sequence Detail	34956	C57BL/6J
transcript	XR_004941428	RefSeq | MGI Sequence Detail	792	C57BL/6J

Other
Accession IDs

MGI:5791517

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;