Gm42164 Pseudogene Detail

Summary

• Symbol
  Gm42164
• Name
  predicted gene, 42164

• Feature Type
  pseudogene
• IDs
  MGI:5625049
  NCBI Gene: 105246976
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:88358518-88358896 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625049	pseudogene	Chr5:88358518-88358896 (+)
129S1/SvImJ	ENSMUSG00200010085	pseudogene	Chr5:84096744-84097122 (+)
A/J	ENSMUSG00195025885	pseudogene	Chr5:83260154-83260532 (+)
AKR/J	ENSMUSG00220012472	pseudogene	Chr5:83400561-83400939 (+)
BALB/cJ	ENSMUSG00180028143	pseudogene	Chr5:83099761-83100139 (+)
C3H/HeJ	ENSMUSG00175044991	pseudogene	Chr5:85175378-85175756 (+)
C57BL/6NJ	ENSMUSG00215033856	pseudogene	Chr5:83953211-83953589 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011665	pseudogene	Chr5:81132403-81132795 (+)
CAST/EiJ	ENSTCUG00005039527	pseudogene	Chr5:82807065-82807443 (+)
CAST/EiJ	ENSTCUG00005039109	pseudogene	Chr5:82875809-82876187 (+)
CBA/J	ENSMUSG00210006878	pseudogene	Chr5:83990193-83990571 (+)
DBA/2J	ENSMUSG00185041117	pseudogene	Chr5:85909411-85909789 (+)
FVB/NJ	ENSMUSG00205034452	pseudogene	Chr5:82797701-82798079 (+)
JF1/MsJ	ENSUMUG00000001022	pseudogene	Chr5:90258409-90258787 (+)
LP/J	ENSMUSG00230001659	pseudogene	Chr5:90626716-90627094 (+)
NOD/ShiLtJ	ENSMUSG00190039687	pseudogene	Chr5:82857136-82857514 (+)
NZO/HlLtJ	ENSMUSG00225009722	pseudogene	Chr5:95651356-95651734 (+)
NZO/HlLtJ	ENSMUSG00225010406	pseudogene	Chr5:95723048-95723422 (+)
PWK/PhJ	ENSLUMG00010031849	pseudogene	Chr5:82894762-82895140 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005030976	pseudogene	Chr5:85886089-85886460 (+)
WSB/EiJ	ENSIUOG00005030577	pseudogene	Chr5:85814526-85814904 (+)

Homology

• Gene Tree
  Gm42164
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm42164
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000105576 (Evidence)
• NCBI Gene
  105246976

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105576	Ensembl Gene Model | MGI Sequence Detail	379	C57BL/6J
transcript	ENSMUST00000198881	Ensembl | MGI Sequence Detail	379	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17