Gm42161 Gene Detail

Summary

• Symbol
  Gm42161
• Name
  predicted gene, 42161
• Synonyms
  Gm43095

• Feature Type
  lncRNA gene
• IDs
  MGI:5625046
  NCBI Gene: 105246972
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:113293194-113302397 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  401 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625046	lncRNA gene	Chr5:113293194-113302453 (+)
129S1/SvImJ	ENSMUSG00200023298	lncRNA gene	Chr5:107037543-107046576 (+)
A/J	ENSMUSG00195043044	lncRNA gene	Chr5:106546584-106555703 (+)
AKR/J	ENSMUSG00220052353	lncRNA gene	Chr5:106062057-106071073 (+)
BALB/cJ	ENSMUSG00180049209	lncRNA gene	Chr5:106687944-106696983 (+)
C3H/HeJ	ENSMUSG00175047157	lncRNA gene	Chr5:108669204-108678265 (+)
C57BL/6NJ	ENSMUSG00215036216	lncRNA gene	Chr5:106693105-106702149 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006156	lincRNA gene	Chr5:106080606-106089486 (+)
CAST/EiJ	ENSTCUG00005033779	lncRNA gene	Chr5:105871815-105880753 (+)
CBA/J	ENSMUSG00210045183	lncRNA gene	Chr5:107421281-107430342 (+)
DBA/2J	ENSMUSG00185048456	lncRNA gene	Chr5:110471687-110480750 (+)
FVB/NJ	ENSMUSG00205051906	lncRNA gene	Chr5:106325686-106334723 (+)
JF1/MsJ	ENSUMUG00000055484	lncRNA gene	Chr5:113309027-113318110 (+)
LP/J	ENSMUSG00230049891	lncRNA gene	Chr5:114575802-114584834 (+)
NOD/ShiLtJ	ENSMUSG00190051288	lncRNA gene	Chr5:106361265-106370279 (+)
NZO/HlLtJ	ENSMUSG00225016117	lncRNA gene	Chr5:122218232-122227245 (+)
PWK/PhJ	ENSLUMG00010041343	lncRNA gene	Chr5:105220588-105229704 (+)
SPRET/EiJ	ENSMSPG00010046676	lncRNA gene	Chr5:108482082-108491206 (+)
WSB/EiJ	ENSIUOG00005045983	lncRNA gene	Chr5:109062742-109071790 (+)

Homology

• Gene Tree
  Gm42161
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42161
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  6

• Ensembl
  ENSMUSG00000106659 (Evidence)
• NCBI Gene
  105246972

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106659	Ensembl Gene Model | MGI Sequence Detail	9204	C57BL/6J
transcript	ENSMUST00000196278	Ensembl | MGI Sequence Detail	885	Not Applicable

Other
Accession IDs

MGI:5663232

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17