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Gm42109 Gene Detail
Summary
  • Symbol
    Gm42109
  • Name
    predicted gene, 42109
  • Synonyms
    Gm43448
Location &
Maps
more
  • Sequence Map
    Chr5:90722004-90732854 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    503 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5624994
 lncRNA gene Chr5:90701058-90736936 (-)
129S1/SvImJ ENSMUSG00200010332
 lncRNA gene Chr5:86421294-86457470 (-)
A/J ENSMUSG00195026216
 lncRNA gene Chr5:85603822-85639705 (-)
AKR/J ENSMUSG00220012136
 lncRNA gene Chr5:85749527-85785405 (-)
BALB/cJ ENSMUSG00180027669
 lncRNA gene Chr5:85447808-85484020 (-)
C3H/HeJ ENSMUSG00175045180
 lncRNA gene Chr5:87543451-87579665 (-)
C57BL/6NJ ENSMUSG00215031128
 lncRNA gene Chr5:86296799-86332679 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013734
 unclassified non-coding RNA gene Chr5:83722710-83758125 (-)
CAST/EiJ ENSTCUG00005038638
 lncRNA gene Chr5:85205485-85241959 (-)
CBA/J ENSMUSG00210006970
 lncRNA gene Chr5:86343242-86379450 (-)
DBA/2J ENSMUSG00185041270
 lncRNA gene Chr5:88257387-88293590 (-)
FVB/NJ ENSMUSG00205035001
 lncRNA gene Chr5:85143857-85180061 (-)
JF1/MsJ ENSUMUG00000046612
 lncRNA gene Chr5:92553303-92589630 (-)
LP/J ENSMUSG00230028269
 lncRNA gene Chr5:92947654-92983824 (-)
NOD/ShiLtJ ENSMUSG00190043072
 lncRNA gene Chr5:85225733-85261938 (-)
NZO/HlLtJ ENSMUSG00225009698
 lncRNA gene Chr5:98095183-98131353 (-)
PWK/PhJ ENSLUMG00010030715
 lncRNA gene Chr5:85219805-85256108 (-)
SPRET/EiJ ENSMSPG00010035361
 lncRNA gene Chr5:87611101-87647396 (-)
WSB/EiJ ENSIUOG00005030545
 lncRNA gene Chr5:88227306-88263501 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving Gm42109
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 105246912 NCBI Gene Model | MGI Sequence Detail 10851 C57BL/6J ±  kb
transcript XR_880417 RefSeq | MGI Sequence Detail 1615 C57BL/6J  
For the selected sequence
Other
Accession IDs
less
MGI:5663585
References
more
  • Summaries
    All 12
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory