Gm42085 Gene Detail

Summary

• Symbol
  Gm42085
• Name
  predicted gene, 42085

• Feature Type
  lncRNA gene
• IDs
  MGI:5624970
  NCBI Gene: 105246880
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:86648435-86666492 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  457 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624970	lncRNA gene	Chr11:86647031-86697782 (+)
129S1/SvImJ	ENSMUSG00200020311	lncRNA gene	Chr11:83796767-83797736 (+)
A/J	ENSMUSG00195009869	lncRNA gene	Chr11:83651482-83652451 (+)
AKR/J	ENSMUSG00220012138	lncRNA gene	Chr11:83851058-83852027 (+)
BALB/cJ	ENSMUSG00180011456	lncRNA gene	Chr11:83840289-83841258 (+)
C3H/HeJ	ENSMUSG00175033263	lncRNA gene	Chr11:83798143-83799112 (+)
C57BL/6NJ	ENSMUSG00215028986	lncRNA gene	Chr11:83424124-83425093 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017081	lncRNA gene	Chr11:83352351-83353320 (+)
CBA/J	ENSMUSG00210040438	lncRNA gene	Chr11:83615723-83616692 (+)
DBA/2J	ENSMUSG00185020038	lncRNA gene	Chr11:83932454-83933423 (+)
FVB/NJ	ENSMUSG00205021546	lncRNA gene	Chr11:83728265-83729234 (+)
JF1/MsJ	ENSUMUG00000026851	lncRNA gene	Chr11:84249851-84250820 (+)
LP/J	ENSMUSG00230030094	lncRNA gene	Chr11:84965758-84966727 (+)
NOD/ShiLtJ	ENSMUSG00190019667	lncRNA gene	Chr11:83940166-83941135 (+)
NZO/HlLtJ	ENSMUSG00225040239	lncRNA gene	Chr11:87076556-87077525 (+)
PWK/PhJ	ENSLUMG00010033935	lncRNA gene	Chr11:83757997-83758966 (+)
SPRET/EiJ	ENSMSPG00010028610	lncRNA gene	Chr11:84217118-84218086 (+)
WSB/EiJ	ENSIUOG00005008387	lncRNA gene	Chr11:83759783-83760752 (+)

Homology

• Gene Tree
  Gm42085
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  24
• Chemically induced (other)
  1
• Gene trapped
  23
• Genomic Mutations
  1 involving Gm42085
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000120202 (Evidence)
• NCBI Gene
  105246880

Representative Sequences			Length	Strain/Species
genomic	105246880	NCBI Gene Model | MGI Sequence Detail	18058	C57BL/6J
transcript	XR_880101	RefSeq | MGI Sequence Detail	1146	C57BL/6J

Other
Accession IDs

MGI:7338623

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm42085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3625	Chr11:86648662-86648702 (+)	247 bp
Tssr103897	Chr11:86648705-86648737 (+)	286 bp
Tssr103898	Chr11:86648743-86648754 (+)	314 bp
Tssr3626	Chr11:86648990-86649015 (+)	568 bp
Tssr103899	Chr11:86649054-86649058 (+)	621 bp