Gm42085 Gene Detail

Summary

• Symbol
  Gm42085
• Name
  predicted gene, 42085

• Feature Type
  lncRNA gene
• IDs
  MGI:5624970
  NCBI Gene: 105246880
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:86648435-86666492 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  457 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624970	lncRNA gene	Chr11:86647031-86697782 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42085
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  24
• Chemically induced (other)
  1
• Gene trapped
  23
• Genomic Mutations
  1 involving Gm42085
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  2

• Ensembl
  ENSMUSG00000120202 (Evidence)
• NCBI Gene
  105246880

Representative Sequences			Length	Strain/Species
genomic	105246880	NCBI Gene Model | MGI Sequence Detail	18058	C57BL/6J
transcript	XR_880101	RefSeq | MGI Sequence Detail	1146	C57BL/6J

Other
Accession IDs

MGI:7338623

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm42085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3625	Chr11:86648662-86648702 (+)	247 bp
Tssr103897	Chr11:86648705-86648737 (+)	286 bp
Tssr103898	Chr11:86648743-86648754 (+)	314 bp
Tssr3626	Chr11:86648990-86649015 (+)	568 bp
Tssr103899	Chr11:86649054-86649058 (+)	621 bp