Gm42064 Gene Detail

Summary

• Symbol
  Gm42064
• Name
  predicted gene, 42064

• Feature Type
  lncRNA gene
• IDs
  MGI:5624949
  NCBI Gene: 105246843
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:5355906-5357131 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624949	lncRNA gene	Chr19:5355893-5357565 (-)
129S1/SvImJ	ENSMUSG00200052794	lncRNA gene	Chr19:2116277-2117918 (-)
A/J	ENSMUSG00195054047	lncRNA gene	Chr19:2511638-2513279 (-)
AKR/J	ENSMUSG00220051989	lncRNA gene	Chr19:2284751-2286392 (-)
BALB/cJ	ENSMUSG00180051710	lncRNA gene	Chr19:2886375-2888016 (-)
C3H/HeJ	ENSMUSG00175014331	lncRNA gene	Chr19:2136578-2138220 (-)
C57BL/6NJ	ENSMUSG00215047049	lncRNA gene	Chr19:2354469-2356110 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044987	lncRNA gene	Chr19:2275926-2277567 (-)
CBA/J	ENSMUSG00210050765	lncRNA gene	Chr19:2136901-2138542 (-)
DBA/2J	ENSMUSG00185052505	lncRNA gene	Chr19:2513371-2515012 (-)
FVB/NJ	ENSMUSG00205052503	lncRNA gene	Chr19:2517216-2518870 (-)
JF1/MsJ	ENSUMUG00000056197	lncRNA gene	Chr19:2494388-2496030 (-)
LP/J	ENSMUSG00230054326	lncRNA gene	Chr19:3423205-3424846 (-)
NOD/ShiLtJ	ENSMUSG00190052997	lncRNA gene	Chr19:2046153-2047794 (-)
NZO/HlLtJ	ENSMUSG00225026915	lncRNA gene	Chr19:7131971-7133612 (-)
PWK/PhJ	ENSLUMG00010009055	lncRNA gene	Chr19:2266983-2268625 (-)
SPRET/EiJ	ENSMSPG00010051599	lncRNA gene	Chr19:2254352-2255993 (-)
WSB/EiJ	ENSIUOG00005051673	lncRNA gene	Chr19:2147957-2149611 (-)

Homology

• Gene Tree
  Gm42064
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000118263 (Evidence)
• NCBI Gene
  105246843

Representative Sequences			Length	Strain/Species
genomic	105246843	NCBI Gene Model | MGI Sequence Detail	1226	C57BL/6J
transcript	NR_166897	RefSeq | MGI Sequence Detail	440	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm42064:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157570	Chr19:5357536-5357556 (-)	-415 bp
Tssr157569	Chr19:5357099-5357142 (-)	10 bp